Os04g0280200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0280200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.82 | 0.325 | 7.99 | -0.504 | 0.431 | 0.277 | 0.0425 | 1.31 | 0.259 | 5.95 | 22.81 | 84 | -- | -- |
| 57.58 | 0.353 | 8.02 | -0.852 | 0.488 | 0.33 | -0.0584 | -- | 0.214 | 6.08 | 21.39 | 177 | -- | -- |
| 47.6 | 0.321 | 7.99 | -0.509 | 0.432 | 0.286 | -- | 1.33 | 0.254 | 5.83 | 22.8 | 63 | -- | -- |
| 57.22 | 0.352 | 8.03 | -0.886 | 0.473 | 0.338 | -- | -- | 0.177 | 5.85 | 20.93 | 182 | -- | -- |
| 56.76 | 0.351 | 8 | -0.493 | -- | 0.271 | -- | 1.33 | 0.272 | -- | 22.6 | 44 | -- | -- |
| 62.53 | 0.371 | 8.01 | -0.811 | 0.427 | -- | 0.241 | -- | 0.251 | 6.95 | -- | -- | -- | -- |
| 62.61 | 0.371 | 8.01 | -0.808 | 0.431 | -- | -- | -- | 0.25 | 6.64 | -- | -- | -- | -- |
| 67.6 | 0.385 | 8.04 | -0.895 | -- | 0.261 | -- | -- | 0.172 | -- | 22.6 | 44 | -- | -- |
| 77.67 | 0.413 | 8 | -- | 0.43 | 0.21 | -- | -- | 0.3 | 6.22 | 20.93 | 182 | -- | -- |
| 72.3 | 0.397 | 8.02 | -0.798 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 79.81 | 0.418 | 7.99 | -- | 0.421 | -- | -- | -- | 0.34 | 6.75 | -- | -- | -- | -- |
| 79.07 | 0.414 | 8 | -- | -- | -0.518 | -- | -- | 0.372 | -- | 28.8 | 524 | -- | -- |
| 89.09 | 0.441 | 8 | -- | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 2 | 44.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 6 | 44.93 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 7 | 44.94 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 15 | 45.10 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 16 | 45.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 18 | 45.14 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 100 | 46.53 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 125 | 46.89 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 126 | 46.90 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 129 | 46.91 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 133 | 46.94 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 139 | 47.00 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 143 | 47.01 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 145 | 47.02 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 155 | 47.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 175 | 47.21 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 14 |
| 250 | 47.53 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 266 | 47.57 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 326 | 47.77 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 332 | 47.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 439 | 48.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 499 | 48.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 504 | 48.19 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 514 | 48.22 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 523 | 48.24 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 551 | 48.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 568 | 48.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 569 | 48.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 571 | 48.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 575 | 48.34 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 13 |
| 584 | 48.36 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 606 | 48.43 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 623 | 48.47 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 624 | 48.47 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 636 | 48.48 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 637 | 48.48 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 644 | 48.49 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 645 | 48.49 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 651 | 48.50 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 690 | 48.57 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 692 | 48.57 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 704 | 48.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 731 | 48.64 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 733 | 48.64 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 773 | 48.73 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 784 | 48.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 796 | 48.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 817 | 48.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 839 | 48.85 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 864 | 48.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 865 | 48.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 866 | 48.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 868 | 48.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 902 | 49.04 | temperature | 10.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 936 | 49.10 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 942 | 49.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 945 | 49.13 | temperature | 15.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 946 | 49.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 964 | 49.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 967 | 49.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 6 |