Os04g0278900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dihydrouridine synthase, DuS family protein.
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Os04g0278900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dihydrouridine synthase, DuS family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.26 | 0.439 | 8.2 | -0.715 | 1.22 | -1.1 | 0.328 | -1.45 | -0.737 | 6.73 | 20.7 | 1425 | -- | -- |
| 90.58 | 0.443 | 8.16 | -0.47 | 1.21 | -0.867 | 0.433 | -- | -0.663 | 6.8 | 21.3 | 1514 | -- | -- |
| 87.2 | 0.435 | 8.2 | -0.727 | 1.23 | -1.06 | -- | -1.41 | -0.735 | 6.67 | 20.9 | 1378 | -- | -- |
| 90.56 | 0.443 | 8.16 | -0.481 | 1.23 | -0.828 | -- | -- | -0.651 | 6.69 | 21.77 | 1445 | -- | -- |
| 149.54 | 0.57 | 8.21 | -0.704 | -- | -1.05 | -- | -1.09 | -0.679 | -- | 21.13 | 580 | -- | -- |
| 111.71 | 0.495 | 8.21 | -0.82 | 1.21 | -- | 0.463 | -- | -0.9 | 6.84 | -- | -- | -- | -- |
| 112.24 | 0.496 | 8.21 | -0.813 | 1.22 | -- | -- | -- | -0.901 | 6.78 | -- | -- | -- | -- |
| 135.54 | 0.542 | 8.18 | -0.541 | -- | -0.932 | -- | -- | -0.551 | -- | 25.1 | 401 | -- | -- |
| 95.27 | 0.455 | 8.14 | -- | 1.2 | -0.976 | -- | -- | -0.563 | 6.76 | 21.65 | 1723 | -- | -- |
| 189.57 | 0.643 | 8.24 | -0.785 | -- | -- | -- | -- | -0.878 | -- | -- | -- | -- | -- |
| 129.64 | 0.533 | 8.19 | -- | 1.21 | -- | -- | -- | -0.811 | 6.82 | -- | -- | -- | -- |
| 142.41 | 0.556 | 8.12 | -- | -- | -1 | -- | -- | -0.387 | -- | 25.2 | 435 | -- | -- |
| 205.84 | 0.67 | 8.22 | -- | -- | -- | -- | -- | -0.79 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 83.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 87 | 87.24 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 105 | 87.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 111 | 87.47 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 115 | 87.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 153 | 87.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 192 | 88.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 229 | 88.18 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 233 | 88.20 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 235 | 88.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 248 | 88.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 342 | 88.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 404 | 88.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 456 | 88.86 | wind | 3 | 14400 | < th | dose dependent | sin | 11 | NA |
| 459 | 88.87 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 464 | 88.87 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 479 | 88.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 481 | 88.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 17 |
| 525 | 88.99 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 589 | 89.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 615 | 89.23 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 617 | 89.24 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 626 | 89.29 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 659 | 89.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 686 | 89.51 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 736 | 89.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 759 | 89.78 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 770 | 89.81 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 771 | 89.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 781 | 89.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 797 | 89.89 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 802 | 89.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 841 | 89.99 | wind | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 856 | 90.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 865 | 90.02 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 866 | 90.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 874 | 90.03 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 876 | 90.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 877 | 90.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 941 | 90.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 954 | 90.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 988 | 90.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |