Os04g0278500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0278500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.14	(0.0197)	R²	:	0.318
β₁	:	-0.201	(0.0732)	R²_dD	:	0.012	R²_D	:	-0.00885
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.47	(0.144)	R²_dE	:	0.162	R²_E	:	0.0877
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-12.6	(1.04)	R²_dD*E	:	0.233	R²_D*E	:	0.143
γ₁	:	-0.0471	(0.0421)	R²_dN8	:	0.00251	R²_N8	:	0.00272
σ	:	0.369
deviance	:	62.71
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	24.88
memory length	:	32
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	7.01
open length of G	:	0.99

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
61.67	0.369	3.14	-0.199	0.133	1.41	0.00617	-12.6	-0.0479	9.95	25	31	7	1
81.6	0.424	3.13	-0.0484	0.14	1.06	-0.254	--	-0.0438	8.9	25	31	7	1
61.67	0.366	3.14	-0.199	0.133	1.41	--	-12.6	-0.0475	9.93	25	32	7.01	1
81.7	0.421	3.13	-0.0557	0.134	1.07	--	--	-0.0529	9.87	24.38	32	6.98	1.26
62.71	0.369	3.14	-0.201	--	1.47	--	-12.6	-0.0471	--	24.88	32	7.01	0.99
89.13	0.443	3.13	-0.049	0.2	--	-0.242	--	-0.0654	8.69	--	--	--	--
89.3	0.443	3.13	-0.0561	0.2	--	--	--	-0.0649	9.05	--	--	--	--
82.69	0.424	3.14	-0.0573	--	1.13	--	--	-0.0616	--	24.36	34	6.96	1.21
81.78	0.421	3.13	--	0.134	1.07	--	--	-0.0472	9.91	24.44	30	7	1.28
91.6	0.447	3.14	-0.0565	--	--	--	--	-0.0637	--	--	--	--	--
89.38	0.442	3.13	--	0.2	--	--	--	-0.0587	9.07	--	--	--	--
82.78	0.424	3.14	--	--	1.12	--	--	-0.0558	--	24.42	33	6.96	1.23
91.69	0.447	3.14	--	--	--	--	--	-0.0575	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	61.67	temperature	25.0	30	> th	dose independent	rect.	7	1
3	70.88	humidity	80.0	10	< th	dose independent	rect.	7	1
9	71.54	humidity	80.0	10	< th	dose independent	rect.	24	8
13	72.22	radiation	10.0	30	> th	dose independent	rect.	7	1
14	72.43	temperature	25.0	10	> th	dose dependent	rect.	7	1
59	78.60	wind	3.0	10	< th	dose dependent	rect.	7	1
60	79.73	wind	7.0	4320	> th	dose independent	rect.	1	1
65	79.73	wind	7.0	4320	> th	dose dependent	rect.	1	1
70	79.94	atmosphere	1005.0	10	> th	dose independent	rect.	7	1
77	80.43	wind	1.0	720	< th	dose dependent	rect.	2	2
82	80.97	wind	3.0	10	< th	dose independent	rect.	7	1
83	81.00	radiation	20.0	10	< th	dose independent	rect.	7	1
89	81.60	wind	1.0	720	< th	dose dependent	rect.	21	2
98	82.10	wind	1.0	720	< th	dose independent	rect.	21	2
101	82.31	wind	9.0	4320	> th	dose independent	rect.	19	1
102	82.31	wind	9.0	4320	> th	dose dependent	rect.	19	1
130	82.73	humidity	50.0	10	> th	dose independent	rect.	8	23
142	83.10	wind	1.0	720	< th	dose independent	rect.	2	2
145	83.18	humidity	80.0	10	< th	dose independent	rect.	20	12
185	83.41	humidity	90.0	10	< th	dose dependent	rect.	7	1
191	83.47	radiation	10.0	10	> th	dose independent	sin	11	NA
193	83.54	atmosphere	1000.0	10	> th	dose independent	rect.	8	23
207	83.76	wind	1.0	30	> th	dose independent	rect.	7	1
210	83.79	wind	1.0	720	> th	dose independent	rect.	13	15
211	83.85	humidity	70.0	30	> th	dose independent	rect.	7	1
251	84.12	precipitation	0.1	10	< th	dose independent	rect.	7	1
252	84.12	precipitation	0.1	10	< th	dose dependent	rect.	7	1
255	84.13	temperature	10.0	10	> th	dose independent	rect.	7	1
257	84.13	temperature	25.0	90	< th	dose independent	rect.	6	1
258	84.13	temperature	30.0	10	< th	dose independent	rect.	7	1
259	84.13	humidity	50.0	10	> th	dose independent	rect.	7	1
261	84.13	atmosphere	995.0	10	> th	dose independent	rect.	7	1
262	84.13	atmosphere	1015.0	10	< th	dose independent	rect.	7	1
263	84.13	temperature	10.0	10	> th	dose independent	rect.	8	23
281	84.19	wind	1.0	720	< th	dose dependent	rect.	15	13
282	84.20	wind	9.0	1440	< th	dose independent	rect.	8	1
285	84.20	temperature	10.0	1440	> th	dose independent	rect.	8	1
290	84.20	humidity	50.0	1440	> th	dose independent	rect.	8	1
292	84.20	atmosphere	995.0	1440	> th	dose independent	rect.	8	1
295	84.20	atmosphere	1015.0	1440	< th	dose independent	rect.	8	1
297	84.20	temperature	10.0	1440	> th	dose independent	rect.	9	23
301	84.21	precipitation	0.1	10	< th	dose independent	rect.	8	23
303	84.21	wind	1.0	720	< th	dose dependent	rect.	20	8
309	84.21	precipitation	0.1	10	< th	dose dependent	rect.	8	23
312	84.24	wind	1.0	720	< th	dose independent	rect.	20	8
316	84.25	atmosphere	995.0	10	> th	dose dependent	rect.	7	1
318	84.26	wind	9.0	1440	> th	dose independent	rect.	9	1
332	84.26	wind	1.0	720	< th	dose dependent	rect.	22	6
337	84.29	precipitation	0.1	1440	< th	dose independent	rect.	8	1
339	84.29	wind	1.0	720	< th	dose independent	rect.	15	13
340	84.29	precipitation	0.1	1440	< th	dose dependent	rect.	8	1
345	84.30	temperature	20.0	30	> th	dose dependent	rect.	2	6
346	84.31	humidity	90.0	30	< th	dose dependent	rect.	3	5
351	84.32	temperature	25.0	30	> th	dose independent	rect.	20	12
360	84.35	wind	1.0	720	> th	dose independent	rect.	22	6
368	84.41	humidity	70.0	4320	> th	dose independent	rect.	20	10
382	84.48	wind	9.0	30	< th	dose independent	rect.	8	23
391	84.55	humidity	70.0	4320	> th	dose independent	rect.	21	1
393	84.57	temperature	20.0	30	> th	dose dependent	rect.	4	4
394	84.58	wind	3.0	720	< th	dose dependent	rect.	20	12
400	84.62	wind	1.0	720	> th	dose independent	rect.	18	10
401	84.62	wind	1.0	720	> th	dose independent	rect.	8	20
408	84.64	wind	1.0	720	< th	dose dependent	rect.	7	21
420	84.69	wind	3.0	10	> th	dose dependent	rect.	8	1
423	84.71	humidity	50.0	4320	> th	dose independent	rect.	16	1
426	84.73	atmosphere	1015.0	10	< th	dose dependent	rect.	7	1
432	84.75	wind	9.0	4320	> th	dose dependent	rect.	14	1
445	84.81	humidity	70.0	4320	> th	dose independent	rect.	20	6
449	84.84	wind	1.0	720	> th	dose independent	sin	16	NA
453	84.85	radiation	40.0	30	< th	dose dependent	rect.	7	1
475	84.95	wind	1.0	14400	> th	dose independent	rect.	22	5
482	84.97	wind	1.0	720	< th	dose independent	rect.	7	21
524	85.13	wind	9.0	4320	> th	dose independent	rect.	14	1
529	85.14	wind	1.0	720	> th	dose independent	rect.	22	22
532	85.15	wind	1.0	1440	> th	dose independent	rect.	2	2
536	85.17	wind	1.0	720	< th	dose independent	sin	16	NA
590	85.29	humidity	70.0	4320	< th	dose independent	rect.	19	12
594	85.29	wind	3.0	720	< th	dose dependent	rect.	2	6
610	85.33	temperature	25.0	10	> th	dose dependent	rect.	20	12
634	85.36	humidity	70.0	4320	< th	dose independent	rect.	19	2
666	85.41	wind	3.0	720	< th	dose dependent	sin	12	NA
675	85.42	wind	7.0	1440	> th	dose dependent	rect.	9	1
682	85.44	humidity	60.0	4320	> th	dose independent	rect.	18	1
699	85.48	humidity	70.0	4320	< th	dose dependent	rect.	20	11
749	85.56	wind	1.0	720	< th	dose dependent	sin	17	NA
750	85.57	radiation	40.0	90	< th	dose independent	rect.	8	22
753	85.58	wind	7.0	4320	< th	dose independent	rect.	1	1
766	85.58	humidity	70.0	4320	< th	dose dependent	rect.	20	1
782	85.59	radiation	10.0	30	> th	dose independent	rect.	11	21
787	85.60	wind	1.0	720	> th	dose independent	rect.	22	13
790	85.60	atmosphere	1015.0	30	< th	dose independent	rect.	8	23
822	85.66	wind	1.0	720	> th	dose independent	rect.	17	17
823	85.66	radiation	1.0	10	> th	dose dependent	rect.	7	1
847	85.69	temperature	30.0	30	< th	dose independent	rect.	8	23
850	85.69	wind	1.0	720	< th	dose dependent	rect.	2	22
858	85.71	wind	9.0	4320	< th	dose independent	rect.	14	2
862	85.71	wind	9.0	720	< th	dose dependent	rect.	20	12
866	85.73	wind	9.0	720	< th	dose dependent	rect.	20	1
869	85.74	wind	9.0	4320	> th	dose independent	rect.	12	3
881	85.75	wind	9.0	720	< th	dose dependent	rect.	1	7
912	85.79	wind	1.0	14400	> th	dose independent	rect.	16	11
936	85.82	wind	5.0	720	< th	dose independent	rect.	20	1
978	85.88	wind	1.0	14400	> th	dose independent	rect.	18	9
996	85.91	radiation	1.0	90	> th	dose independent	rect.	8	22
999	85.91	wind	9.0	30	< th	dose dependent	rect.	8	23
1000	85.92	wind	9.0	4320	< th	dose independent	rect.	12	3