Os04g0278200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os04g0278200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.85 | 0.342 | 6.75 | -0.494 | 0.365 | 0.565 | -0.0821 | -0.609 | 0.0648 | 6.59 | 19.2 | 923 | -- | -- |
| 53.45 | 0.34 | 6.74 | -0.424 | 0.376 | 0.638 | 0.0993 | -- | 0.0697 | 6.91 | 19.7 | 888 | -- | -- |
| 52.84 | 0.339 | 6.75 | -0.504 | 0.359 | 0.563 | -- | -0.64 | 0.0634 | 6.66 | 19.2 | 965 | -- | -- |
| 53.46 | 0.341 | 6.74 | -0.42 | 0.371 | 0.637 | -- | -- | 0.0738 | 6.79 | 19.67 | 888 | -- | -- |
| 59.44 | 0.359 | 6.76 | -0.492 | -- | 0.541 | -- | -0.707 | 0.0742 | -- | 19.1 | 1062 | -- | -- |
| 61.83 | 0.369 | 6.72 | -0.181 | 0.346 | -- | -0.339 | -- | 0.189 | 5.45 | -- | -- | -- | -- |
| 62 | 0.369 | 6.71 | -0.181 | 0.347 | -- | -- | -- | 0.191 | 5.92 | -- | -- | -- | -- |
| 60.19 | 0.361 | 6.74 | -0.405 | -- | 0.618 | -- | -- | 0.0953 | -- | 19.6 | 1089 | -- | -- |
| 57.07 | 0.352 | 6.72 | -- | 0.366 | 0.437 | -- | -- | 0.136 | 6.55 | 20.3 | 827 | -- | -- |
| 68.26 | 0.386 | 6.72 | -0.17 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 62.86 | 0.371 | 6.71 | -- | 0.345 | -- | -- | -- | 0.211 | 5.94 | -- | -- | -- | -- |
| 63.77 | 0.372 | 6.73 | -- | -- | 0.418 | -- | -- | 0.152 | -- | 20.2 | 1017 | -- | -- |
| 69.02 | 0.388 | 6.72 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.35 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 2 | 47.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 48 | 48.78 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 50 | 48.80 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 65 | 48.93 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 81 | 49.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 86 | 49.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 129 | 49.55 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 131 | 49.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 6 |
| 135 | 49.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |
| 146 | 49.67 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 150 | 49.69 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 155 | 49.74 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 177 | 49.82 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 180 | 49.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 185 | 49.84 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 212 | 49.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 213 | 49.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 259 | 50.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 266 | 50.15 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 274 | 50.20 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 279 | 50.24 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 280 | 50.24 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 290 | 50.28 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 21 | NA |
| 299 | 50.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 323 | 50.37 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 341 | 50.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 354 | 50.48 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 404 | 50.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 413 | 50.62 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 428 | 50.65 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 457 | 50.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 474 | 50.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 513 | 50.84 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 551 | 50.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 554 | 50.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 702 | 51.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 762 | 51.23 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 770 | 51.24 | humidity | 90.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 775 | 51.24 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 785 | 51.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 790 | 51.27 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 792 | 51.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 833 | 51.32 | temperature | 20.0 | 720 | < th | dose independent | sin | 4 | NA |
| 849 | 51.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 859 | 51.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 15 |
| 862 | 51.36 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 868 | 51.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 894 | 51.39 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 905 | 51.40 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 914 | 51.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 918 | 51.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 987 | 51.48 | humidity | 60.0 | 14400 | > th | dose dependent | sin | 1 | NA |