FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0276200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.69 (0.0265) R2 : 0.000207
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0171 (0.0557) R2dN8 : 0.000267 R2N8 : 0.000207
σ : 0.498
deviance : 113.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.04 0.495 2.69 0.0393 0.038 0.54 -0.328 -1.6 0.0626 15 0.772 261 -- --
112.06 0.493 2.68 0.0455 0.0451 0.41 -0.252 -- 0.051 14.6 0.7997 266 -- --
111.37 0.492 2.69 0.0304 0.0348 0.54 -- -1.5 0.0609 14.9 0.7735 266 -- --
112.27 0.493 2.68 0.047 0.0335 0.376 -- -- 0.0555 13.2 0.751 268 -- --
111.44 0.492 2.69 0.032 -- 0.523 -- -1.49 0.0595 -- 0.785 266 -- --
113.29 0.499 2.68 0.105 0.0481 -- -0.234 -- 0.0289 11.3 -- -- -- --
113.41 0.499 2.68 0.094 0.0682 -- -- -- 0.0269 8.48 -- -- -- --
112.34 0.494 2.68 0.047 -- 0.37 -- -- 0.0544 -- 0.7501 268 -- --
112.33 0.494 2.68 -- 0.0337 0.391 -- -- 0.0513 13.2 0.7545 268 -- --
113.67 0.498 2.69 0.0943 -- -- -- -- 0.0276 -- -- -- -- --
113.65 0.499 2.69 -- 0.0686 -- -- -- 0.0164 8.38 -- -- -- --
112.4 0.494 2.68 -- -- 0.386 -- -- 0.0505 -- 0.7893 268 -- --
113.91 0.498 2.69 -- -- -- -- -- 0.0171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.45 wind 1.0 270 < th dose dependent rect. 2 1
2 107.16 radiation 1.0 10 < th dose independent rect. 5 1
5 108.60 radiation 1.0 10 < th dose dependent rect. 5 1
6 108.66 wind 1.0 270 < th dose independent rect. 2 1
8 109.14 wind 9.0 1440 < th dose independent rect. 17 2
11 109.19 temperature 30.0 1440 > th dose dependent rect. 8 1
12 109.19 wind 9.0 1440 > th dose dependent rect. 17 2
27 109.21 radiation 10.0 4320 > th dose independent rect. 17 1
39 109.22 wind 9.0 1440 > th dose independent rect. 17 1
48 109.40 temperature 25.0 10 > th dose dependent rect. 13 1
49 109.44 wind 9.0 1440 > th dose dependent rect. 14 4
53 109.52 wind 1.0 30 < th dose independent rect. 10 1
54 109.52 temperature 10.0 1440 > th dose independent rect. 11 1
58 109.52 atmosphere 995.0 1440 > th dose independent rect. 11 1
61 109.52 precipitation 0.1 1440 < th dose independent rect. 11 1
62 109.52 temperature 10.0 1440 > th dose independent rect. 12 23
65 109.52 wind 7.0 1440 > th dose dependent rect. 14 1
66 109.52 wind 1.0 30 < th dose dependent rect. 10 1
67 109.52 precipitation 0.1 1440 < th dose dependent rect. 11 1
84 109.62 temperature 30.0 1440 > th dose independent rect. 8 1
99 109.66 radiation 20.0 30 > th dose independent rect. 10 1
100 109.66 temperature 25.0 30 > th dose dependent rect. 10 1
101 109.67 atmosphere 1010.0 30 < th dose independent rect. 10 1
103 109.69 radiation 40.0 30 < th dose independent rect. 10 1
104 109.70 atmosphere 1000.0 30 > th dose independent rect. 10 1
107 109.71 temperature 30.0 30 < th dose independent rect. 10 1
109 109.72 atmosphere 995.0 30 > th dose dependent rect. 10 1
111 109.73 humidity 70.0 30 < th dose independent rect. 10 1
127 109.75 wind 5.0 30 < th dose dependent rect. 10 1
130 109.76 wind 5.0 30 < th dose independent rect. 10 1
133 109.76 temperature 20.0 30 > th dose independent rect. 10 1
137 109.77 humidity 60.0 30 > th dose independent rect. 10 1
140 109.78 temperature 10.0 30 > th dose independent rect. 10 1
143 109.78 humidity 90.0 30 < th dose independent rect. 10 1
147 109.78 precipitation 0.1 30 < th dose independent rect. 10 1
148 109.78 temperature 10.0 30 > th dose independent rect. 11 23
149 109.78 precipitation 0.1 30 < th dose dependent rect. 10 1
150 109.79 wind 1.0 30 > th dose independent rect. 10 1
151 109.79 humidity 80.0 30 < th dose dependent rect. 10 1
153 109.80 atmosphere 1000.0 270 < th dose dependent rect. 17 4
154 109.80 atmosphere 1000.0 90 < th dose dependent rect. 17 7
155 109.81 wind 1.0 270 < th dose independent rect. 19 1
159 109.81 wind 1.0 270 < th dose dependent rect. 19 1
161 109.81 atmosphere 1000.0 10 < th dose dependent rect. 17 7
165 109.82 atmosphere 1000.0 270 < th dose independent rect. 19 1
168 109.82 temperature 30.0 4320 < th dose independent rect. 23 10
170 109.82 atmosphere 1000.0 270 < th dose dependent rect. 19 1
175 109.82 atmosphere 1000.0 90 < th dose dependent rect. 19 5
180 109.83 atmosphere 1000.0 90 < th dose dependent rect. 21 3
185 109.83 atmosphere 1000.0 10 < th dose dependent rect. 19 5
194 109.84 atmosphere 1000.0 90 < th dose dependent rect. 22 1
199 109.84 atmosphere 1000.0 10 < th dose dependent rect. 21 3
209 109.85 atmosphere 1000.0 10 < th dose dependent rect. 23 1
228 109.86 radiation 1.0 30 > th dose dependent rect. 10 1
233 109.87 wind 9.0 1440 > th dose independent rect. 14 1
236 109.88 atmosphere 1000.0 90 < th dose independent rect. 22 1
237 109.88 atmosphere 1000.0 10 < th dose independent rect. 23 1
256 109.89 temperature 30.0 4320 < th dose independent rect. 7 2
289 109.92 atmosphere 1000.0 10 < th dose independent rect. 18 7
322 109.93 temperature 30.0 4320 < th dose independent rect. 19 14
323 109.93 radiation 40.0 30 < th dose dependent rect. 10 1
336 109.95 humidity 50.0 30 > th dose dependent rect. 10 1
379 110.00 wind 9.0 30 < th dose independent rect. 11 23
437 110.06 atmosphere 1015.0 30 < th dose dependent rect. 10 1
571 110.17 wind 9.0 720 > th dose dependent sin 12 NA
601 110.19 wind 1.0 30 > th dose dependent rect. 10 1
647 110.22 wind 9.0 1440 < th dose independent rect. 14 1
667 110.24 wind 9.0 1440 < th dose independent rect. 14 6
731 110.30 atmosphere 1015.0 30 < th dose independent rect. 11 23
738 110.31 wind 1.0 1440 < th dose dependent rect. 6 2
744 110.32 atmosphere 1000.0 10 < th dose independent sin 11 NA
779 110.35 wind 9.0 1440 > th dose independent rect. 14 4
804 110.35 temperature 25.0 90 > th dose dependent rect. 18 20
807 110.36 atmosphere 1015.0 10 < th dose independent rect. 6 23
834 110.39 radiation 10.0 4320 < th dose independent rect. 17 1
837 110.39 atmosphere 1015.0 90 < th dose independent rect. 5 23
856 110.41 atmosphere 1015.0 720 < th dose independent rect. 20 22
870 110.42 radiation 40.0 4320 < th dose dependent rect. 18 11
879 110.44 temperature 20.0 10 > th dose independent rect. 5 1
881 110.44 temperature 20.0 10 > th dose dependent rect. 5 1
888 110.45 radiation 40.0 4320 < th dose dependent rect. 18 2
927 110.47 atmosphere 1015.0 720 < th dose independent rect. 6 17
928 110.47 atmosphere 1000.0 30 < th dose dependent sin 11 NA
956 110.51 atmosphere 1000.0 30 > th dose independent sin 13 NA