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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0275100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.054) R2 : 0.251
β1 : -0.95 (0.198) R2dD : 0.0402 R2D : 0.0238
β2 : 0.968 (0.132) R2dC : 0.0912 R2C : 0.111
β3 : -0.57 (0.0991) R2dE : 0.0592 R2E : 0.0585
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.1 (0.391) R2dD*E : 0.0483 R2D*E : 0.0321
γ1 : 0.356 (0.117) R2dN8 : 0.0214 R2N8 : 0.0115
σ : 1
deviance : 460.85
__
_____
C
peak time of C : 2.12
E
wheather : atmosphere
threshold : 1005
memory length : 59
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.02
open length of G : 18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
460.96 1.01 4.03 -0.955 0.97 -0.566 -0.25 2.07 0.354 2.11 1005 55 9.1 18
484.8 1.03 4.01 -0.854 0.996 -0.612 -0.753 -- 0.348 2.37 1005 112 9.02 18
460.85 1 4.03 -0.95 0.968 -0.57 -- 2.1 0.356 2.12 1005 59 9.02 18
486.31 1.03 4.01 -0.822 1.01 -0.625 -- -- 0.371 2.16 1005 115 8.98 18.1
515.68 1.06 4.04 -0.864 -- -0.667 -- 2.1 0.381 -- 1005 61 8.98 18
517.25 1.07 4.04 -0.77 1.15 -- -0.868 -- 0.196 3.1 -- -- -- --
519.71 1.07 4.03 -0.752 1.15 -- -- -- 0.201 3.03 -- -- -- --
543.77 1.09 4.01 -0.837 -- -0.67 -- -- 0.351 -- 1005 63 9.02 18
503.74 1.05 3.98 -- 1.01 -0.591 -- -- 0.434 2.18 1005 114 9.03 18.1
594.96 1.14 4.03 -0.703 -- -- -- -- 0.231 -- -- -- -- --
534.62 1.08 4.02 -- 1.13 -- -- -- 0.285 3.03 -- -- -- --
560.34 1.1 3.96 -- -- -0.655 -- -- 0.45 -- 1005 61 9 18
607.99 1.15 4.01 -- -- -- -- -- 0.309 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 467.16 atmosphere 1005.0 30 > th dose independent rect. 9 18
2 467.45 atmosphere 995.0 30 > th dose dependent rect. 9 18
5 468.97 atmosphere 1005.0 90 > th dose independent rect. 7 20
13 471.40 atmosphere 995.0 30 > th dose dependent rect. 7 20
15 471.66 temperature 20.0 270 > th dose independent rect. 11 20
16 471.78 humidity 60.0 30 > th dose dependent rect. 3 6
21 472.50 radiation 20.0 10 < th dose independent rect. 3 6
22 472.53 humidity 70.0 30 > th dose independent rect. 3 6
29 472.75 temperature 20.0 10 > th dose independent rect. 12 21
49 474.12 wind 9.0 1440 < th dose independent rect. 23 5
57 475.29 radiation 40.0 30 < th dose dependent rect. 3 6
58 475.30 temperature 20.0 30 > th dose independent rect. 12 19
63 475.51 atmosphere 995.0 270 > th dose dependent rect. 5 22
64 475.56 temperature 20.0 270 > th dose independent rect. 3 2
117 477.74 temperature 20.0 270 > th dose independent rect. 1 6
121 477.78 atmosphere 1015.0 30 < th dose dependent rect. 3 19
124 477.90 humidity 90.0 270 < th dose dependent rect. 20 12
127 477.99 atmosphere 1000.0 30 > th dose independent rect. 3 6
138 478.29 temperature 10.0 30 > th dose dependent rect. 3 6
144 478.60 humidity 90.0 270 < th dose independent rect. 20 14
145 478.62 atmosphere 1010.0 90 < th dose dependent rect. 11 22
146 478.63 humidity 80.0 270 > th dose dependent rect. 21 11
152 478.85 humidity 90.0 270 < th dose independent rect. 20 12
163 479.00 humidity 50.0 1440 > th dose independent rect. 4 6
164 479.01 temperature 20.0 10 > th dose independent rect. 3 6
165 479.01 temperature 10.0 1440 > th dose independent rect. 4 6
168 479.01 atmosphere 995.0 1440 > th dose independent rect. 4 6
169 479.01 atmosphere 1015.0 1440 < th dose independent rect. 4 6
170 479.01 temperature 10.0 1440 > th dose independent rect. 10 18
174 479.03 humidity 70.0 270 > th dose dependent rect. 23 9
176 479.07 temperature 20.0 270 > th dose independent rect. 1 18
180 479.13 atmosphere 1000.0 30 > th dose independent rect. 3 19
204 479.52 atmosphere 1010.0 90 < th dose dependent rect. 24 23
206 479.54 atmosphere 1010.0 270 < th dose dependent rect. 23 21
227 480.00 temperature 15.0 270 > th dose dependent rect. 3 2
258 480.37 wind 9.0 30 < th dose independent rect. 3 6
259 480.37 temperature 10.0 30 > th dose independent rect. 3 6
261 480.37 temperature 30.0 30 < th dose independent rect. 3 6
262 480.37 humidity 50.0 30 > th dose independent rect. 3 6
265 480.37 atmosphere 1015.0 30 < th dose independent rect. 3 6
266 480.37 temperature 10.0 30 > th dose independent rect. 9 18
269 480.44 precipitation 0.1 30 < th dose independent rect. 9 18
270 480.44 precipitation 0.1 30 < th dose dependent rect. 9 18
279 480.55 atmosphere 1000.0 30 > th dose independent rect. 3 17
280 480.55 atmosphere 995.0 30 > th dose dependent rect. 20 7
283 480.57 atmosphere 1015.0 30 < th dose dependent rect. 3 23
318 481.01 temperature 20.0 10 > th dose independent rect. 3 17
320 481.04 wind 9.0 30 < th dose independent rect. 9 18
335 481.18 wind 7.0 4320 > th dose independent rect. 15 13
347 481.28 precipitation 0.1 30 < th dose independent rect. 3 6
348 481.28 precipitation 0.1 30 < th dose dependent rect. 3 6
381 481.45 wind 7.0 4320 < th dose independent rect. 15 13
399 481.67 atmosphere 1005.0 30 > th dose independent rect. 20 7
409 481.75 radiation 10.0 90 < th dose independent rect. 3 4
414 481.83 atmosphere 1000.0 270 > th dose independent rect. 23 23
415 481.84 atmosphere 1005.0 270 > th dose independent rect. 19 6
427 482.00 atmosphere 1015.0 30 < th dose dependent rect. 3 17
461 482.26 atmosphere 1005.0 30 > th dose independent rect. 9 15
477 482.36 atmosphere 1005.0 30 > th dose independent rect. 22 5
492 482.45 humidity 90.0 270 < th dose independent sin 9 NA
495 482.46 atmosphere 1000.0 270 > th dose independent rect. 11 20
506 482.54 atmosphere 995.0 30 > th dose independent rect. 9 18
507 482.55 atmosphere 995.0 30 > th dose dependent rect. 22 5
535 482.84 humidity 50.0 30 > th dose independent rect. 9 18
542 482.89 radiation 10.0 270 < th dose independent rect. 1 6
549 482.95 humidity 80.0 270 > th dose independent rect. 24 8
572 483.04 atmosphere 1010.0 270 < th dose dependent no NA NA
573 483.04 wind 5.0 4320 > th dose dependent rect. 15 14
582 483.09 wind 1.0 90 > th dose independent rect. 9 18
590 483.14 temperature 10.0 30 > th dose dependent rect. 3 17
598 483.21 humidity 70.0 270 > th dose dependent rect. 3 1
612 483.30 atmosphere 1000.0 30 > th dose independent rect. 12 21
629 483.40 temperature 10.0 30 > th dose dependent rect. 3 19
632 483.40 atmosphere 1010.0 270 < th dose dependent rect. 15 23
668 483.61 atmosphere 995.0 30 > th dose dependent rect. 9 23
681 483.70 atmosphere 1005.0 270 > th dose independent rect. 22 1
688 483.74 temperature 10.0 30 > th dose dependent rect. 3 4
694 483.78 atmosphere 995.0 30 > th dose dependent rect. 3 6
698 483.80 atmosphere 1000.0 270 > th dose independent rect. 1 18
708 483.83 atmosphere 1000.0 30 > th dose dependent rect. 9 15
712 483.85 humidity 80.0 270 > th dose independent rect. 3 1
716 483.88 atmosphere 1000.0 270 > th dose independent rect. 3 1
729 483.97 humidity 80.0 270 > th dose dependent sin 10 NA
736 484.02 wind 5.0 30 < th dose independent rect. 20 7
759 484.10 precipitation 0.1 270 < th dose independent rect. 4 23
760 484.10 precipitation 0.1 270 < th dose dependent rect. 4 23
770 484.16 atmosphere 1000.0 270 > th dose independent rect. 12 18
798 484.29 wind 9.0 30 < th dose dependent rect. 3 6
801 484.29 atmosphere 995.0 10 > th dose dependent rect. 7 23
803 484.30 radiation 10.0 270 < th dose dependent rect. 1 6
838 484.44 atmosphere 1000.0 270 > th dose independent rect. 24 7
854 484.51 wind 7.0 4320 > th dose dependent rect. 15 9
858 484.53 atmosphere 1005.0 720 > th dose independent rect. 15 12
878 484.60 wind 9.0 270 < th dose independent rect. 4 23
891 484.66 humidity 90.0 270 < th dose independent rect. 19 7
908 484.71 temperature 10.0 1440 > th dose independent rect. 21 7
911 484.71 temperature 30.0 1440 < th dose independent rect. 21 7
915 484.71 humidity 50.0 1440 > th dose independent rect. 21 7
921 484.71 atmosphere 995.0 1440 > th dose independent rect. 21 7
922 484.71 radiation 1.0 1440 < th dose independent rect. 21 7
943 484.71 temperature 10.0 1440 > th dose independent rect. 4 17
946 484.71 radiation 10.0 1440 < th dose dependent rect. 21 7
954 484.74 wind 7.0 4320 > th dose independent sin 13 NA
968 484.79 wind 9.0 4320 < th dose independent rect. 4 4
978 484.83 atmosphere 1005.0 270 < th dose independent rect. 9 20