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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0274700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0262) R2 : 0.000863
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0346 (0.0552) R2dN8 : 0.00111 R2N8 : 0.000863
σ : 0.494
deviance : 111.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.84 0.481 3.23 0.433 0.162 -0.445 -0.667 1.14 0.193 2.94 6.646 2453 -- --
106 0.48 3.26 0.223 0.135 -0.482 -0.53 -- 0.148 3.22 10.99 6207 -- --
106.13 0.48 3.23 0.409 0.115 -0.479 -- 1.16 0.192 3.34 12.27 1904 -- --
106.94 0.482 3.26 0.23 0.133 -0.486 -- -- 0.144 4 10.27 6176 -- --
106.81 0.481 3.23 0.416 -- -0.441 -- 1.04 0.194 -- 17.9 1871 -- --
109.92 0.492 3.29 -0.0174 0.128 -- -0.582 -- 0.0277 3.45 -- -- -- --
110.93 0.493 3.29 -0.00696 0.131 -- -- -- 0.031 4.34 -- -- -- --
107.9 0.484 3.26 0.234 -- -0.481 -- -- 0.146 -- 10.27 6184 -- --
107.96 0.484 3.27 -- 0.135 -0.356 -- -- 0.0946 3.97 10.1 6147 -- --
111.86 0.494 3.29 -0.00176 -- -- -- -- 0.0344 -- -- -- -- --
110.93 0.493 3.29 -- 0.131 -- -- -- 0.0317 4.34 -- -- -- --
108.95 0.486 3.27 -- -- -0.354 -- -- 0.097 -- 10.3 6179 -- --
111.86 0.494 3.29 -- -- -- -- -- 0.0346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.10 humidity 90 43200 < th dose independent rect. 6 2
3 102.25 humidity 90 43200 > th dose independent rect. 6 1
5 102.33 humidity 70 43200 > th dose dependent rect. 7 7
8 102.41 humidity 50 720 < th dose independent rect. 10 3
25 102.41 humidity 90 43200 > th dose dependent rect. 18 1
26 102.41 humidity 80 43200 > th dose dependent rect. 7 2
29 102.43 radiation 1 14400 < th dose independent rect. 23 8
30 102.43 humidity 80 43200 > th dose dependent rect. 6 4
38 102.45 radiation 1 14400 > th dose independent rect. 5 2
39 102.45 radiation 1 14400 < th dose independent rect. 5 2
40 102.45 radiation 1 14400 < th dose independent rect. 3 4
62 102.50 humidity 80 43200 > th dose independent rect. 7 7
64 102.54 humidity 80 43200 > th dose independent rect. 9 2
71 102.57 humidity 90 43200 > th dose dependent rect. 11 12
72 102.58 humidity 60 4320 < th dose dependent rect. 18 2
80 102.58 humidity 90 43200 > th dose dependent rect. 12 9
94 102.62 humidity 80 43200 < th dose independent rect. 8 6
103 102.65 humidity 90 43200 < th dose independent rect. 12 3
108 102.67 humidity 80 43200 < th dose independent rect. 9 2
117 102.71 humidity 90 14400 > th dose dependent rect. 22 3
124 102.72 humidity 90 43200 > th dose independent rect. 6 10
135 102.75 humidity 90 43200 < th dose independent rect. 6 10
144 102.76 humidity 90 43200 > th dose dependent rect. 6 17
148 102.77 humidity 80 43200 > th dose independent rect. 7 14
149 102.77 humidity 90 43200 > th dose dependent sin 21 NA
165 102.80 humidity 80 43200 < th dose independent rect. 7 13
193 102.83 humidity 70 43200 > th dose dependent rect. 12 1
201 102.84 humidity 90 43200 > th dose dependent rect. 12 3
222 102.86 humidity 90 43200 > th dose independent rect. 12 4
281 102.91 humidity 90 43200 > th dose independent rect. 6 17
289 102.92 humidity 90 43200 > th dose independent sin 23 NA
290 102.92 radiation 30 4320 < th dose independent rect. 6 2
292 102.92 radiation 30 4320 < th dose independent rect. 23 9
322 102.94 radiation 30 4320 < th dose independent rect. 16 16
327 102.95 humidity 50 1440 > th dose independent rect. 17 1
352 102.96 humidity 50 1440 < th dose independent rect. 16 2
379 102.97 humidity 60 4320 < th dose independent rect. 18 2
406 102.98 humidity 50 1440 > th dose independent rect. 16 7
475 103.00 humidity 90 43200 > th dose independent rect. 11 8
485 103.01 humidity 90 43200 < th dose independent sin 0 NA
548 103.02 humidity 50 1440 > th dose independent rect. 16 9
555 103.02 humidity 90 43200 > th dose independent rect. 11 12
641 103.04 radiation 1 4320 < th dose dependent rect. 6 1
691 103.06 temperature 20 1440 > th dose dependent rect. 20 1
707 103.07 radiation 1 43200 < th dose dependent rect. 11 2
711 103.08 radiation 1 43200 > th dose independent rect. 11 1
712 103.08 radiation 1 43200 < th dose independent rect. 11 2
723 103.08 radiation 1 43200 > th dose independent rect. 11 20
737 103.09 humidity 50 1440 > th dose independent rect. 16 16
833 103.12 radiation 1 43200 < th dose independent rect. 11 20
851 103.13 radiation 1 43200 > th dose independent rect. 14 17
859 103.14 radiation 1 43200 > th dose independent rect. 16 1
888 103.15 radiation 1 43200 < th dose independent rect. 16 1
910 103.16 wind 1 43200 < th dose independent rect. 17 2
914 103.16 radiation 1 43200 > th dose independent rect. 11 7
915 103.16 radiation 1 43200 < th dose independent rect. 11 7