Os04g0274400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : YL1 nuclear, C-terminal domain containing protein.
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Os04g0274400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : YL1 nuclear, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.89 | 0.204 | 8.23 | 0.597 | 0.24 | -0.848 | -0.736 | -0.577 | 0.173 | 1.35 | 22.21 | 1531 | -- | -- |
| 19.13 | 0.204 | 8.24 | 0.543 | 0.241 | -0.706 | -0.731 | -- | 0.16 | 1.33 | 22.6 | 1532 | -- | -- |
| 20.92 | 0.215 | 8.23 | 0.718 | 0.35 | -0.765 | -- | -0.817 | 0.21 | 1.42 | 22.43 | 1432 | -- | -- |
| 21.18 | 0.214 | 8.24 | 0.573 | 0.216 | -0.693 | -- | -- | 0.168 | 1.58 | 22.66 | 1271 | -- | -- |
| 23.7 | 0.227 | 8.24 | 0.601 | -- | -0.813 | -- | -0.272 | 0.171 | -- | 22.8 | 1131 | -- | -- |
| 24.04 | 0.23 | 8.22 | 0.741 | 0.248 | -- | -0.728 | -- | 0.267 | 1.53 | -- | -- | -- | -- |
| 26.16 | 0.24 | 8.22 | 0.765 | 0.249 | -- | -- | -- | 0.271 | 1.6 | -- | -- | -- | -- |
| 23.61 | 0.226 | 8.24 | 0.575 | -- | -0.721 | -- | -- | 0.165 | -- | 22.8 | 1032 | -- | -- |
| 26.56 | 0.24 | 8.27 | -- | 0.205 | -0.948 | -- | -- | 0.0609 | 1.46 | 21.32 | 2589 | -- | -- |
| 29.94 | 0.256 | 8.21 | 0.775 | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
| 41.59 | 0.302 | 8.24 | -- | 0.262 | -- | -- | -- | 0.186 | 1.7 | -- | -- | -- | -- |
| 29.02 | 0.251 | 8.26 | -- | -- | -0.989 | -- | -- | 0.0604 | -- | 21.24 | 2485 | -- | -- |
| 45.78 | 0.316 | 8.23 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 2 | 18.83 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 16 | 19.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 49 | 19.14 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 53 | 19.16 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 90 | 19.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 101 | 19.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 126 | 19.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 135 | 19.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 174 | 19.32 | temperature | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 182 | 19.32 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 192 | 19.33 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 261 | 19.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 319 | 19.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 363 | 19.46 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 366 | 19.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 378 | 19.46 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 395 | 19.48 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 482 | 19.51 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 611 | 19.57 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 660 | 19.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 661 | 19.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 676 | 19.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 679 | 19.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 696 | 19.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 708 | 19.61 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 712 | 19.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 739 | 19.62 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 740 | 19.62 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 741 | 19.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 752 | 19.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 755 | 19.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 756 | 19.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 759 | 19.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 792 | 19.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 799 | 19.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 801 | 19.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 882 | 19.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 930 | 19.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 933 | 19.67 | temperature | 20 | 1440 | > th | dose independent | sin | 0 | NA |
| 975 | 19.68 | temperature | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 976 | 19.68 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 977 | 19.68 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |