Os04g0274300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os04g0274300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.74 | 0.592 | 2.92 | 0.634 | 0.177 | -1.07 | 0.0837 | 8.45 | 0.118 | 3.57 | 49.95 | 12 | -- | -- |
| 162.18 | 0.598 | 2.96 | 0.507 | 0.167 | 2.32 | -0.0604 | -- | 0.117 | 3.9 | 47 | 21 | -- | -- |
| 158.76 | 0.587 | 2.92 | 0.634 | 0.176 | -1.06 | -- | 8.38 | 0.118 | 3.66 | 49.8 | 12 | -- | -- |
| 160.34 | 0.59 | 2.96 | 0.538 | 0.161 | 2.24 | -- | -- | 0.116 | 3.29 | 48 | 9 | -- | -- |
| 160.46 | 0.59 | 2.92 | 0.648 | -- | -1.17 | -- | 8.48 | 0.121 | -- | 49.71 | 12 | -- | -- |
| 178.74 | 0.627 | 2.96 | 0.619 | 0.13 | -- | -0.351 | -- | 0.106 | 4.36 | -- | -- | -- | -- |
| 179.02 | 0.627 | 2.96 | 0.622 | 0.133 | -- | -- | -- | 0.108 | 5.22 | -- | -- | -- | -- |
| 161.88 | 0.593 | 2.96 | 0.505 | -- | 2.26 | -- | -- | 0.122 | -- | 47.67 | 9 | -- | -- |
| 166.4 | 0.601 | 2.97 | -- | 0.187 | 2.56 | -- | -- | 0.0652 | 3.64 | 47.04 | 7 | -- | -- |
| 179.94 | 0.627 | 2.96 | 0.627 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 189.23 | 0.643 | 2.98 | -- | 0.144 | -- | -- | -- | 0.0384 | 5.06 | -- | -- | -- | -- |
| 166.85 | 0.602 | 2.97 | -- | -- | 2.59 | -- | -- | 0.0705 | -- | 47.46 | 2 | -- | -- |
| 190.31 | 0.644 | 2.98 | -- | -- | -- | -- | -- | 0.0415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.46 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 2 | 158.10 | humidity | 50 | 10 | < th | dose independent | sin | 7 | NA |
| 3 | 158.18 | humidity | 50 | 10 | < th | dose dependent | sin | 7 | NA |
| 4 | 158.27 | humidity | 50 | 10 | > th | dose independent | sin | 6 | NA |
| 5 | 158.36 | humidity | 50 | 10 | < th | dose independent | rect. | 11 | 3 |
| 23 | 158.42 | humidity | 50 | 10 | < th | dose independent | rect. | 16 | 22 |
| 47 | 158.62 | humidity | 50 | 10 | < th | dose independent | sin | 2 | NA |
| 56 | 158.90 | humidity | 50 | 10 | < th | dose independent | no | NA | NA |
| 57 | 158.90 | humidity | 50 | 10 | < th | dose independent | rect. | 11 | 7 |
| 272 | 159.31 | humidity | 50 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 361 | 159.60 | humidity | 50 | 10 | < th | dose independent | rect. | 13 | 23 |
| 378 | 159.73 | humidity | 50 | 90 | < th | dose dependent | rect. | 11 | 2 |
| 400 | 159.83 | humidity | 50 | 10 | > th | dose independent | rect. | 1 | 23 |
| 533 | 160.38 | humidity | 50 | 90 | < th | dose dependent | rect. | 16 | 22 |
| 537 | 160.48 | humidity | 50 | 10 | < th | dose dependent | sin | 17 | NA |
| 686 | 161.24 | humidity | 50 | 10 | < th | dose dependent | no | NA | NA |
| 898 | 161.36 | humidity | 50 | 10 | < th | dose dependent | rect. | 13 | 23 |