Os04g0272500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0272500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.58 | 0.268 | 7.75 | 0.273 | 0.409 | -0.475 | 0.0185 | 2.83 | 0.28 | 4.9 | 23.56 | 2377 | -- | -- |
| 35.5 | 0.278 | 7.83 | -0.439 | 0.44 | -0.262 | 0.0421 | -- | 0.137 | 5.29 | 21.85 | 9751 | -- | -- |
| 32.45 | 0.265 | 7.74 | 0.355 | 0.409 | -0.539 | -- | 3.31 | 0.276 | 4.87 | 24.7 | 2437 | -- | -- |
| 35.48 | 0.277 | 7.83 | -0.425 | 0.434 | -0.256 | -- | -- | 0.138 | 5.22 | 21.24 | 9826 | -- | -- |
| 39.47 | 0.293 | 7.74 | 0.438 | -- | -0.691 | -- | 4.21 | 0.276 | -- | 26 | 2059 | -- | -- |
| 37.56 | 0.287 | 7.85 | -0.587 | 0.417 | -- | 0.064 | -- | 0.0341 | 5.45 | -- | -- | -- | -- |
| 37.57 | 0.287 | 7.85 | -0.587 | 0.418 | -- | -- | -- | 0.0338 | 5.44 | -- | -- | -- | -- |
| 42.16 | 0.304 | 7.84 | -0.487 | -- | -0.442 | -- | -- | 0.115 | -- | 19.85 | 15011 | -- | -- |
| 36.76 | 0.282 | 7.79 | -- | 0.455 | -0.563 | -- | -- | 0.307 | 5.29 | 16.84 | 22771 | -- | -- |
| 46.65 | 0.319 | 7.86 | -0.573 | -- | -- | -- | -- | 0.0441 | -- | -- | -- | -- | -- |
| 46.64 | 0.319 | 7.84 | -- | 0.408 | -- | -- | -- | 0.0991 | 5.5 | -- | -- | -- | -- |
| 44.85 | 0.312 | 7.81 | -- | -- | -0.566 | -- | -- | 0.267 | -- | 12.13 | 22152 | -- | -- |
| 55.31 | 0.347 | 7.84 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.94 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 2 | 31.19 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 3 | 31.36 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 5 | 31.46 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 6 | 31.50 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 7 | 31.54 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 9 | 31.56 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 11 | 31.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 13 | 31.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 14 | 31.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 16 | 31.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 20 | 31.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 27 | 31.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 28 | 31.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 29 | 31.80 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 34 | 31.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 46 | 31.84 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 47 | 31.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 50 | 31.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 51 | 31.85 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 56 | 31.86 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 58 | 31.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 61 | 31.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 118 | 31.96 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 119 | 31.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 138 | 31.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 147 | 31.98 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 155 | 32.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 156 | 32.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 171 | 32.01 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 182 | 32.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 183 | 32.03 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 186 | 32.03 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 199 | 32.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 205 | 32.05 | humidity | 90 | 14400 | < th | dose independent | sin | 9 | NA |
| 206 | 32.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 209 | 32.05 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 226 | 32.06 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 229 | 32.07 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 230 | 32.07 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 236 | 32.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 239 | 32.07 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 247 | 32.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 248 | 32.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 261 | 32.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 271 | 32.09 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 284 | 32.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 293 | 32.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 304 | 32.11 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 324 | 32.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 325 | 32.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 353 | 32.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 358 | 32.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 18 |
| 369 | 32.13 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 383 | 32.13 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 389 | 32.14 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 418 | 32.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 443 | 32.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 448 | 32.16 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 472 | 32.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 481 | 32.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 518 | 32.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 527 | 32.18 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 556 | 32.19 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 557 | 32.19 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 559 | 32.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 578 | 32.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 597 | 32.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 625 | 32.20 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 634 | 32.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 647 | 32.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 649 | 32.21 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 686 | 32.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 701 | 32.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 713 | 32.23 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 714 | 32.23 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 738 | 32.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 739 | 32.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 759 | 32.24 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 800 | 32.24 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 836 | 32.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 871 | 32.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 872 | 32.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 875 | 32.26 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 885 | 32.27 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 928 | 32.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 942 | 32.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 947 | 32.28 | wind | 3 | 43200 | < th | dose independent | sin | 1 | NA |
| 987 | 32.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |