Os04g0270200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0172 family protein.
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Os04g0270200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0172 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.08 | 0.205 | 11.5 | 1.13 | 0.608 | 0.81 | -0.0688 | 0.377 | 0.239 | 17.7 | 27 | 60 | -- | -- |
| 19.29 | 0.205 | 11.4 | 1.19 | 0.608 | 0.796 | -0.144 | -- | 0.256 | 17.7 | 27.1 | 60 | -- | -- |
| 19.08 | 0.203 | 11.5 | 1.12 | 0.606 | 0.811 | -- | 0.403 | 0.238 | 17.7 | 26.91 | 59 | -- | -- |
| 19.34 | 0.205 | 11.4 | 1.19 | 0.607 | 0.797 | -- | -- | 0.255 | 17.7 | 27.1 | 60 | -- | -- |
| 33.27 | 0.27 | 11.5 | 1.07 | -- | 0.706 | -- | 0.453 | 0.164 | -- | 24.14 | 30 | -- | -- |
| 28.2 | 0.249 | 11.5 | 0.992 | 0.49 | -- | -0.0813 | -- | 0.0782 | 19 | -- | -- | -- | -- |
| 28.22 | 0.249 | 11.5 | 0.993 | 0.489 | -- | -- | -- | 0.078 | 19 | -- | -- | -- | -- |
| 33.63 | 0.271 | 11.5 | 1.13 | -- | 0.666 | -- | -- | 0.177 | -- | 24.14 | 30 | -- | -- |
| 52.62 | 0.34 | 11.5 | -- | 0.505 | 0.315 | -- | -- | 0.0281 | 18.5 | 27.1 | 60 | -- | -- |
| 40.83 | 0.299 | 11.5 | 0.984 | -- | -- | -- | -- | 0.069 | -- | -- | -- | -- | -- |
| 54.23 | 0.344 | 11.5 | -- | 0.479 | -- | -- | -- | -0.0327 | 19.2 | -- | -- | -- | -- |
| 64.9 | 0.376 | 11.5 | -- | -- | 0.288 | -- | -- | -0.000647 | -- | 24.13 | 16 | -- | -- |
| 66.35 | 0.38 | 11.5 | -- | -- | -- | -- | -- | -0.0401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 19.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 19.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 5 | 19.49 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 19.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 19.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 19.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 12 | 19.66 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 13 | 19.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 19 | 19.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 27 | 19.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 28 | 19.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 29 | 19.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 33 | 19.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 44 | 19.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 58 | 19.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 60 | 19.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 71 | 19.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 77 | 19.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 93 | 19.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 147 | 20.11 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 169 | 20.16 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 230 | 20.27 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 270 | 20.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 350 | 20.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 366 | 20.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 391 | 20.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 392 | 20.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 400 | 20.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 403 | 20.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 420 | 20.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 465 | 20.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 480 | 20.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 483 | 20.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 505 | 20.59 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 507 | 20.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 515 | 20.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 639 | 20.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 656 | 20.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 877 | 20.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 957 | 20.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |