Os04g0269900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0269900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.03 | 0.42 | 8.61 | 0.714 | 0.431 | -1.67 | -0.67 | 2.02 | 0.598 | 14.4 | 19.39 | 769 | 3.82 | 4.03 |
| 82.74 | 0.424 | 8.63 | 0.487 | 0.657 | -1.68 | -0.312 | -- | 0.529 | 15.2 | 17.84 | 800 | 3.72 | 4.51 |
| 80.37 | 0.418 | 8.63 | 0.741 | 0.503 | -1.63 | -- | 1.79 | 0.565 | 15.6 | 18.91 | 816 | 3.65 | 4.38 |
| 81.13 | 0.42 | 8.64 | 0.38 | 0.705 | -1.8 | -- | -- | 0.509 | 14.3 | 16.67 | 808 | 3.63 | 4.28 |
| 84.97 | 0.429 | 8.62 | 0.631 | -- | -1.5 | -- | 1.87 | 0.545 | -- | 19.95 | 827 | 2.62 | 4.93 |
| 151.46 | 0.577 | 8.74 | 0.0271 | 0.599 | -- | 0.549 | -- | 0.132 | 23.2 | -- | -- | -- | -- |
| 152.74 | 0.579 | 8.74 | 0.00528 | 0.597 | -- | -- | -- | 0.13 | 23.1 | -- | -- | -- | -- |
| 89.3 | 0.44 | 8.65 | 0.323 | -- | -1.52 | -- | -- | 0.499 | -- | 19.92 | 823 | 2.32 | 5.5 |
| 84.26 | 0.428 | 8.65 | -- | 0.655 | -1.73 | -- | -- | 0.439 | 14.1 | 16.69 | 796 | 3.57 | 4.34 |
| 174.98 | 0.618 | 8.73 | 0.019 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 152.74 | 0.578 | 8.74 | -- | 0.598 | -- | -- | -- | 0.129 | 23.1 | -- | -- | -- | -- |
| 91.05 | 0.444 | 8.66 | -- | -- | -1.38 | -- | -- | 0.441 | -- | 19.69 | 813 | 2.98 | 4.52 |
| 174.99 | 0.617 | 8.73 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 18 | 89.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 57 | 91.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 59 | 91.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 60 | 91.76 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 68 | 91.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 162 | 94.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 165 | 94.55 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 186 | 95.04 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 246 | 96.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 248 | 96.91 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 286 | 97.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 287 | 97.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 297 | 97.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 356 | 98.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 378 | 99.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 672 | 102.26 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 674 | 102.28 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 744 | 102.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 845 | 103.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |