Os04g0268700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eggshell protein family protein.
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Os04g0268700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eggshell protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 398.23 | 0.938 | 4.13 | 1.21 | 1.52 | 2.16 | 1.88 | 1.56 | 0.278 | 7.74 | 20.5 | 566 | 4.06 | 3.13 |
| 400.38 | 0.932 | 4.15 | 1.08 | 1.54 | 2.16 | 2.24 | -- | 0.272 | 7.81 | 20.7 | 555 | 4.08 | 3.13 |
| 405.74 | 0.938 | 4.12 | 1.36 | 1.4 | 2.26 | -- | 2.7 | 0.328 | 7.2 | 19.37 | 570 | 3.75 | 3.59 |
| 413.05 | 0.947 | 4.16 | 1.03 | 1.51 | 2.3 | -- | -- | 0.208 | 7.43 | 20.6 | 562 | 4.1 | 3.2 |
| 411.8 | 0.945 | 4.15 | 1.3 | -- | 3.11 | -- | 3.26 | 0.335 | -- | 14.28 | 519 | 2.6 | 4.33 |
| 504.83 | 1.05 | 4.02 | 1.21 | 2.55 | -- | 2.58 | -- | 0.652 | 8.71 | -- | -- | -- | -- |
| 526.45 | 1.07 | 4.02 | 1.29 | 2.55 | -- | -- | -- | 0.651 | 8.6 | -- | -- | -- | -- |
| 423.86 | 0.959 | 4.2 | 0.937 | -- | 3.37 | -- | -- | 0.187 | -- | 14.6 | 567 | 1.53 | 5.76 |
| 440.07 | 0.977 | 4.18 | -- | 1.47 | 2.4 | -- | -- | 0.0946 | 7.22 | 20.33 | 566 | 4.02 | 3.3 |
| 893.58 | 1.4 | 4.09 | 1.3 | -- | -- | -- | -- | 0.674 | -- | -- | -- | -- | -- |
| 570.43 | 1.12 | 4.06 | -- | 2.56 | -- | -- | -- | 0.507 | 8.56 | -- | -- | -- | -- |
| 443.89 | 0.981 | 4.22 | -- | -- | 3.39 | -- | -- | 0.112 | -- | 15.1 | 575 | 1.5 | 5.73 |
| 938.15 | 1.43 | 4.12 | -- | -- | -- | -- | -- | 0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 416.04 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 6 | 420.18 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 37 | 423.74 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 60 | 425.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 61 | 425.48 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 63 | 425.61 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 67 | 425.78 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 82 | 426.50 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 93 | 427.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 103 | 427.29 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 104 | 427.32 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 105 | 427.37 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 114 | 427.55 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 130 | 428.04 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 143 | 428.22 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 168 | 428.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 191 | 428.78 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 196 | 428.86 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 214 | 428.99 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 222 | 429.07 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 243 | 429.25 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 264 | 429.45 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 268 | 429.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 17 |
| 276 | 429.53 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 279 | 429.54 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 281 | 429.55 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 299 | 429.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 301 | 429.64 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 305 | 429.64 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 18 |
| 316 | 429.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 14 |
| 319 | 429.67 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 348 | 429.72 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 358 | 429.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 377 | 429.81 | humidity | 90.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 381 | 429.81 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 384 | 429.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 416 | 429.92 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 417 | 429.92 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 429 | 429.94 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 434 | 429.95 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 451 | 429.98 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 463 | 430.00 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 531 | 430.07 | temperature | 25.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 540 | 430.08 | temperature | 25.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 543 | 430.08 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 545 | 430.08 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 552 | 430.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 580 | 430.14 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 588 | 430.15 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 637 | 430.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 659 | 430.27 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 660 | 430.27 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 12 |
| 713 | 430.34 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 748 | 430.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 750 | 430.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 800 | 430.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 831 | 430.47 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 851 | 430.50 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 853 | 430.50 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 904 | 430.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 954 | 430.62 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 959 | 430.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 967 | 430.63 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 977 | 430.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 981 | 430.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |