Os04g0268300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0268300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.52 | 0.416 | 3.58 | 0.599 | 0.229 | -0.856 | 0.226 | -0.48 | -0.171 | 10.4 | 21.4 | 884 | -- | -- |
| 78.76 | 0.413 | 3.56 | 0.676 | 0.227 | -0.771 | 0.354 | -- | -0.144 | 10.3 | 21.9 | 882 | -- | -- |
| 78.7 | 0.413 | 3.58 | 0.579 | 0.227 | -0.859 | -- | -0.582 | -0.177 | 10.4 | 21.4 | 888 | -- | -- |
| 78.86 | 0.414 | 3.56 | 0.661 | 0.232 | -0.745 | -- | -- | -0.127 | 10.4 | 22.2 | 853 | -- | -- |
| 81.67 | 0.421 | 3.58 | 0.602 | -- | -0.928 | -- | -0.567 | -0.161 | -- | 21.48 | 857 | -- | -- |
| 102.46 | 0.475 | 3.61 | 0.408 | 0.38 | -- | 0.343 | -- | -0.378 | 10.4 | -- | -- | -- | -- |
| 102.94 | 0.475 | 3.61 | 0.422 | 0.378 | -- | -- | -- | -0.377 | 10.5 | -- | -- | -- | -- |
| 81.9 | 0.421 | 3.56 | 0.68 | -- | -0.803 | -- | -- | -0.107 | -- | 22.21 | 852 | -- | -- |
| 89.92 | 0.442 | 3.56 | -- | 0.267 | -0.613 | -- | -- | -0.199 | 10.3 | 22.3 | 842 | -- | -- |
| 111.69 | 0.494 | 3.62 | 0.415 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 107.62 | 0.485 | 3.62 | -- | 0.376 | -- | -- | -- | -0.424 | 10.4 | -- | -- | -- | -- |
| 93.38 | 0.45 | 3.59 | -- | -- | -0.683 | -- | -- | -0.219 | -- | 22.3 | 852 | -- | -- |
| 116.24 | 0.503 | 3.63 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 4 | 80.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 18 | 80.34 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 63 | 80.66 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 66 | 80.69 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 80 | 80.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 89 | 81.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 90 | 81.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 118 | 81.31 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 143 | 81.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 158 | 81.64 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 159 | 81.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 170 | 81.71 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 185 | 81.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 196 | 81.92 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 240 | 82.07 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 267 | 82.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 268 | 82.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 269 | 82.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 291 | 82.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 305 | 82.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 363 | 82.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 368 | 82.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 410 | 82.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 481 | 82.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 493 | 82.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 535 | 83.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 536 | 83.13 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 588 | 83.30 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 630 | 83.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 715 | 83.57 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 716 | 83.57 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 738 | 83.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 767 | 83.64 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 826 | 83.71 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 906 | 83.81 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 934 | 83.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 15 |