Os04g0261200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0261200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.46 | 0.565 | 7.59 | 0.147 | 0.37 | 2.59 | 1.18 | 0.796 | -0.4 | 5.57 | 25 | 1630 | -- | -- |
| 145.06 | 0.561 | 7.57 | 0.295 | 0.354 | 2.5 | 1.2 | -- | -0.368 | 5.61 | 25.1 | 1671 | -- | -- |
| 146.9 | 0.564 | 7.59 | 0.166 | 0.391 | 2.58 | -- | 0.68 | -0.397 | 4.38 | 25 | 1632 | -- | -- |
| 146.31 | 0.563 | 7.57 | 0.337 | 0.332 | 2.27 | -- | -- | -0.373 | 2.97 | 25.29 | 2005 | -- | -- |
| 153.46 | 0.577 | 7.59 | 0.181 | -- | 2.5 | -- | 0.836 | -0.388 | -- | 25.08 | 1872 | -- | -- |
| 230.91 | 0.712 | 7.69 | -0.497 | 0.345 | -- | 1.36 | -- | -0.903 | 5.88 | -- | -- | -- | -- |
| 234.09 | 0.716 | 7.7 | -0.491 | 0.382 | -- | -- | -- | -0.911 | 4.35 | -- | -- | -- | -- |
| 153.99 | 0.578 | 7.57 | 0.34 | -- | 2.42 | -- | -- | -0.352 | -- | 25.3 | 1864 | -- | -- |
| 148.52 | 0.568 | 7.59 | -- | 0.459 | 2.1 | -- | -- | -0.424 | 2.96 | 25.15 | 2189 | -- | -- |
| 241.92 | 0.727 | 7.7 | -0.476 | -- | -- | -- | -- | -0.901 | -- | -- | -- | -- | -- |
| 240.44 | 0.725 | 7.68 | -- | 0.372 | -- | -- | -- | -0.856 | 4.38 | -- | -- | -- | -- |
| 156.52 | 0.583 | 7.59 | -- | -- | 2.26 | -- | -- | -0.419 | -- | 25.38 | 1844 | -- | -- |
| 247.89 | 0.735 | 7.69 | -- | -- | -- | -- | -- | -0.848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 11 | 139.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 23 | 139.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 31 | 139.95 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 39 | 140.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 66 | 140.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 103 | 141.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 111 | 141.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 132 | 141.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 156 | 142.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 183 | 142.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 188 | 142.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 219 | 142.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 259 | 142.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 341 | 143.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 342 | 143.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 390 | 143.35 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 526 | 144.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 598 | 144.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 653 | 144.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 683 | 144.98 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 705 | 145.08 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 724 | 145.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 760 | 145.26 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 808 | 145.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 899 | 145.76 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |