Os04g0259200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0259200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.11 | 0.319 | 10.9 | -0.73 | 0.807 | 0.739 | 1.09 | -0.218 | -0.261 | 5.96 | 13 | 1309 | -- | -- |
| 46.17 | 0.316 | 10.9 | -0.717 | 0.824 | 0.743 | 1.07 | -- | -0.264 | 6.05 | 13 | 1293 | -- | -- |
| 48.89 | 0.326 | 10.9 | -0.724 | 0.813 | 0.749 | -- | -0.289 | -0.265 | 6.13 | 13.04 | 1294 | -- | -- |
| 49.01 | 0.326 | 10.9 | -0.691 | 0.826 | 0.745 | -- | -- | -0.255 | 6.18 | 13.05 | 1293 | -- | -- |
| 80.99 | 0.419 | 10.9 | -0.612 | -- | 0.68 | -- | -0.145 | -0.211 | -- | 16.81 | 1373 | -- | -- |
| 61.9 | 0.369 | 10.9 | -0.517 | 0.789 | -- | 1.21 | -- | -0.0478 | 5.2 | -- | -- | -- | -- |
| 65.57 | 0.379 | 10.9 | -0.516 | 0.798 | -- | -- | -- | -0.0532 | 5.32 | -- | -- | -- | -- |
| 81.02 | 0.419 | 10.9 | -0.614 | -- | 0.678 | -- | -- | -0.209 | -- | 16.44 | 1382 | -- | -- |
| 58.61 | 0.357 | 10.9 | -- | 0.839 | 0.641 | -- | -- | -0.153 | 6.01 | 19.98 | 1281 | -- | -- |
| 98.77 | 0.464 | 10.9 | -0.488 | -- | -- | -- | -- | -0.0334 | -- | -- | -- | -- | -- |
| 72.58 | 0.399 | 10.9 | -- | 0.789 | -- | -- | -- | 0.0042 | 5.34 | -- | -- | -- | -- |
| 89.55 | 0.441 | 10.9 | -- | -- | 0.644 | -- | -- | -0.12 | -- | 19.98 | 1388 | -- | -- |
| 105.06 | 0.478 | 10.9 | -- | -- | -- | -- | -- | 0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 3 | 46.75 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 8 | 46.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 9 | 46.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 12 | 46.79 | radiation | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 44 | 46.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 45 | 46.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 77 | 47.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 100 | 47.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 101 | 47.30 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 114 | 47.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 129 | 47.36 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 206 | 47.38 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 233 | 47.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 251 | 47.52 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 294 | 47.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 377 | 47.74 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 399 | 47.75 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 429 | 47.79 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 453 | 47.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 462 | 47.84 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 470 | 47.85 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 537 | 47.92 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 543 | 47.93 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 544 | 47.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 547 | 47.93 | radiation | 20 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 552 | 47.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 647 | 48.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 692 | 48.10 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 958 | 48.22 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |