Os04g0255600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0255600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.28 | 0.662 | 6.03 | -0.949 | 0.126 | -0.954 | 1.61 | 0.235 | 0.705 | 20.9 | 25.7 | 3980 | -- | -- |
| 198.41 | 0.656 | 6.03 | -0.952 | 0.126 | -0.96 | 1.62 | -- | 0.71 | 21 | 25.7 | 3979 | -- | -- |
| 202.59 | 0.663 | 5.99 | -0.807 | 0.216 | -0.84 | -- | 0.889 | 0.822 | 17.8 | 26.12 | 2575 | -- | -- |
| 203.07 | 0.664 | 6.02 | -0.999 | 0.169 | -0.846 | -- | -- | 0.729 | 16.2 | 26.3 | 2932 | -- | -- |
| 204.82 | 0.667 | 5.98 | -0.772 | -- | -0.888 | -- | 0.984 | 0.828 | -- | 26.12 | 2628 | -- | -- |
| 222.53 | 0.699 | 6.07 | -1.36 | 0.0023 | -- | 1.53 | -- | 0.506 | 21.5 | -- | -- | -- | -- |
| 226.37 | 0.705 | 6.07 | -1.4 | 0.292 | -- | -- | -- | 0.512 | 15.8 | -- | -- | -- | -- |
| 205.21 | 0.667 | 6.02 | -1.06 | -- | -0.808 | -- | -- | 0.719 | -- | 26.3 | 2893 | -- | -- |
| 232.28 | 0.71 | 6.02 | -- | 0.192 | -0.846 | -- | -- | 0.815 | 16.5 | 26.2 | 2912 | -- | -- |
| 231.08 | 0.71 | 6.07 | -1.41 | -- | -- | -- | -- | 0.504 | -- | -- | -- | -- | -- |
| 278.05 | 0.78 | 6.04 | -- | 0.319 | -- | -- | -- | 0.668 | 15.7 | -- | -- | -- | -- |
| 232.56 | 0.71 | 5.99 | -- | -- | -1.08 | -- | -- | 0.878 | -- | 26.2 | 2930 | -- | -- |
| 283.7 | 0.786 | 6.04 | -- | -- | -- | -- | -- | 0.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.75 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 2 | 189.79 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 3 | 189.95 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 15 | 191.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 17 | 191.90 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 18 | 191.98 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 20 | 192.13 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 24 | 192.42 | temperature | 25.0 | 720 | > th | dose independent | sin | 11 | NA |
| 34 | 192.70 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 36 | 192.72 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 47 | 193.06 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 14 |
| 78 | 193.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 79 | 193.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 82 | 193.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 84 | 193.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 105 | 193.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 106 | 193.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 112 | 193.66 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 113 | 193.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 116 | 193.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 139 | 193.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 184 | 194.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 185 | 194.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 211 | 194.23 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 8 |
| 224 | 194.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 252 | 194.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 254 | 194.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 263 | 194.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 296 | 194.59 | temperature | 25.0 | 720 | < th | dose independent | sin | 10 | NA |
| 299 | 194.60 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 301 | 194.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 314 | 194.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 315 | 194.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 321 | 194.70 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 342 | 194.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 345 | 194.79 | temperature | 25.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 349 | 194.80 | temperature | 25.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 350 | 194.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 354 | 194.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 356 | 194.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 362 | 194.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 366 | 194.85 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 375 | 194.88 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 413 | 194.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 424 | 194.98 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 432 | 195.00 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 434 | 195.01 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 448 | 195.04 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 472 | 195.08 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 492 | 195.12 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 579 | 195.28 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 587 | 195.29 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 588 | 195.29 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 593 | 195.29 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 624 | 195.34 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 6 | NA |
| 643 | 195.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 647 | 195.39 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 654 | 195.39 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 661 | 195.40 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 3 | 13 |
| 704 | 195.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 713 | 195.49 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 821 | 195.64 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 6 | NA |
| 826 | 195.64 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 6 | NA |
| 860 | 195.67 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 902 | 195.72 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 6 | NA |
| 908 | 195.73 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 947 | 195.78 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 960 | 195.79 | temperature | 25.0 | 43200 | > th | dose dependent | sin | 12 | NA |