Os04g0254300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0254300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.99 | 0.481 | 5.56 | 4.09 | 0.473 | 1.12 | 0.0511 | 2.62 | 0.521 | 16.3 | 20.9 | 7282 | -- | -- |
| 110.5 | 0.49 | 5.67 | 3.89 | 0.461 | 0.703 | 0.169 | -- | 0.453 | 16 | 24.5 | 3196 | -- | -- |
| 105 | 0.477 | 5.56 | 4.09 | 0.474 | 1.12 | -- | 2.62 | 0.522 | 16.4 | 20.91 | 7281 | -- | -- |
| 110.22 | 0.489 | 5.67 | 3.88 | 0.486 | 0.678 | -- | -- | 0.44 | 16.4 | 24.5 | 3059 | -- | -- |
| 116.83 | 0.503 | 5.55 | 4.04 | -- | 1.12 | -- | 2.57 | 0.502 | -- | 21 | 7736 | -- | -- |
| 123.05 | 0.52 | 5.63 | 4.13 | 0.453 | -- | 0.0202 | -- | 0.642 | 16.5 | -- | -- | -- | -- |
| 123.05 | 0.519 | 5.63 | 4.13 | 0.453 | -- | -- | -- | 0.642 | 16.5 | -- | -- | -- | -- |
| 112.14 | 0.495 | 5.65 | 4.02 | -- | 0.462 | -- | -- | 0.491 | -- | 26.11 | 4632 | -- | -- |
| 177.81 | 0.621 | 5.93 | -- | 0.458 | 3.04 | -- | -- | -0.668 | 18 | 19.3 | 47520 | -- | -- |
| 134.03 | 0.541 | 5.62 | 4.11 | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
| 573.07 | 1.12 | 5.73 | -- | 0.377 | -- | -- | -- | 0.182 | 16.8 | -- | -- | -- | -- |
| 187.15 | 0.637 | 5.92 | -- | -- | 3.06 | -- | -- | -0.667 | -- | 19.32 | 47520 | -- | -- |
| 580.6 | 1.12 | 5.73 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.60 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 3 | 102.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 8 | 103.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 17 | 103.80 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 20 | 103.93 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 23 | 104.05 | temperature | 20.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 34 | 104.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 40 | 104.38 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 44 | 104.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 45 | 104.46 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 46 | 104.50 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 48 | 104.57 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 55 | 104.62 | temperature | 25.0 | 90 | > th | dose independent | sin | 3 | NA |
| 72 | 104.77 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 83 | 104.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 88 | 104.90 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 13 |
| 94 | 104.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 12 | 12 |
| 99 | 104.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 110 | 104.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 133 | 105.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 153 | 105.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 175 | 105.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 200 | 105.43 | temperature | 25.0 | 90 | < th | dose independent | sin | 2 | NA |
| 202 | 105.44 | temperature | 20.0 | 4320 | > th | dose independent | sin | 19 | NA |
| 215 | 105.49 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 235 | 105.57 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 237 | 105.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 244 | 105.62 | temperature | 20.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 245 | 105.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 247 | 105.63 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 292 | 105.91 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 16 |
| 304 | 105.99 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 328 | 106.10 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 355 | 106.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 16 |
| 359 | 106.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 19 |
| 414 | 106.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 417 | 106.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 425 | 106.47 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 456 | 106.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 465 | 106.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 21 |
| 477 | 106.62 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 481 | 106.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 525 | 106.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 559 | 106.89 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 560 | 106.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 563 | 106.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 591 | 106.98 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 607 | 107.03 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 621 | 107.06 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 636 | 107.09 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 639 | 107.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 11 |
| 652 | 107.14 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 662 | 107.15 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 668 | 107.16 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 710 | 107.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 717 | 107.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 760 | 107.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 863 | 107.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 972 | 107.64 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 975 | 107.65 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 19 |