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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0253200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0215) R2 : 0.00335
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.056 (0.0452) R2dN8 : 0.00433 R2N8 : 0.00335
σ : 0.404
deviance : 74.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.38 0.386 3.39 0.217 0.198 0.542 0.188 1.18 -0.0186 7 0.4857 10 -- --
67.38 0.382 3.39 0.216 0.203 0.764 0.172 -- -0.0035 6.82 0.09883 7 -- --
67.44 0.382 3.39 0.216 0.198 0.594 -- 0.99 -0.0187 6.94 0.07878 9 -- --
67.41 0.382 3.39 0.207 0.192 0.765 -- -- -0.0163 6.99 0.007007 7 -- --
69.45 0.388 3.4 0.212 -- 0.717 -- 0.737 -0.0141 -- 0.1 9 -- --
70.62 0.394 3.4 0.245 0.221 -- 0.21 -- -0.032 6.16 -- -- -- --
70.73 0.394 3.4 0.247 0.222 -- -- -- -0.0327 6.24 -- -- -- --
69.33 0.388 3.4 0.208 -- 0.818 -- -- -0.0117 -- 0.06967 7 -- --
68.53 0.386 3.4 -- 0.192 0.814 -- -- -0.038 6.97 4.746e-05 7 -- --
73.29 0.4 3.4 0.253 -- -- -- -- -0.0279 -- -- -- -- --
72.34 0.398 3.4 -- 0.226 -- -- -- -0.0603 6.18 -- -- -- --
70.45 0.391 3.4 -- -- 0.868 -- -- -0.0334 -- 0.06629 7 -- --
74.98 0.404 3.41 -- -- -- -- -- -0.056 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.62 wind 1 30 < th dose dependent rect. 23 6
3 67.12 wind 9 4320 < th dose independent rect. 17 4
10 67.15 humidity 90 1440 > th dose dependent rect. 6 2
11 67.18 atmosphere 1000 1440 > th dose independent rect. 11 1
12 67.18 wind 9 4320 > th dose independent rect. 17 5
30 67.22 wind 9 4320 > th dose dependent rect. 16 5
32 67.23 humidity 80 270 < th dose independent rect. 1 1
34 67.23 humidity 80 270 < th dose dependent rect. 1 1
36 67.24 atmosphere 1000 1440 < th dose independent rect. 11 1
64 67.27 wind 9 4320 < th dose independent rect. 17 10
71 67.28 wind 1 30 < th dose dependent rect. 22 14
89 67.32 wind 9 4320 > th dose dependent rect. 15 20
90 67.33 wind 1 30 < th dose independent rect. 23 6
97 67.34 wind 1 10 < th dose dependent rect. 2 22
113 67.38 wind 1 10 < th dose dependent rect. 4 20
127 67.46 wind 1 4320 > th dose dependent rect. 22 1
140 67.51 wind 1 10 < th dose dependent sin 8 NA
145 67.51 wind 1 30 < th dose dependent rect. 11 18
151 67.52 wind 1 10 < th dose dependent rect. 23 17
173 67.54 wind 7 4320 < th dose dependent rect. 22 1
194 67.55 wind 9 4320 > th dose dependent sin 13 NA
204 67.56 wind 9 4320 > th dose independent rect. 16 19
235 67.57 wind 9 4320 > th dose dependent rect. 17 1
247 67.60 wind 3 14400 < th dose independent rect. 1 1
251 67.61 humidity 80 14400 > th dose independent rect. 15 1
253 67.61 atmosphere 1000 1440 < th dose dependent rect. 11 1
268 67.62 temperature 20 90 > th dose independent rect. 19 12
279 67.63 wind 9 4320 > th dose independent rect. 17 1
280 67.63 wind 9 4320 < th dose independent rect. 17 1
318 67.67 wind 9 4320 > th dose independent sin 13 NA
331 67.68 wind 9 4320 < th dose independent rect. 16 19
370 67.70 wind 1 10 < th dose dependent no NA NA
395 67.71 radiation 1 1440 < th dose dependent rect. 7 1
428 67.74 temperature 20 90 > th dose independent rect. 19 14
429 67.74 radiation 20 720 > th dose independent rect. 15 17
432 67.74 wind 3 4320 < th dose dependent rect. 18 6
439 67.75 wind 9 14400 > th dose dependent rect. 5 6
453 67.76 humidity 90 30 < th dose dependent rect. 1 5
462 67.77 humidity 80 1440 > th dose independent rect. 1 1
463 67.77 wind 9 14400 > th dose independent rect. 6 5
474 67.78 wind 9 4320 < th dose independent sin 13 NA
485 67.79 wind 3 14400 > th dose independent rect. 1 1
486 67.79 radiation 20 720 < th dose independent rect. 15 1
491 67.79 radiation 40 1440 > th dose dependent rect. 15 1
517 67.80 radiation 20 720 > th dose independent rect. 15 2
533 67.80 temperature 20 30 > th dose independent rect. 5 23
535 67.80 radiation 40 1440 > th dose dependent rect. 11 1
543 67.81 wind 1 1440 < th dose dependent rect. 11 1
558 67.82 radiation 20 270 > th dose dependent rect. 6 1
634 67.87 wind 3 4320 > th dose independent rect. 22 1
635 67.87 wind 3 4320 < th dose independent rect. 22 1
639 67.87 radiation 40 1440 > th dose dependent rect. 15 19
643 67.88 wind 3 14400 > th dose independent rect. 22 4
644 67.88 temperature 20 270 < th dose independent rect. 22 9
651 67.89 humidity 90 4320 > th dose independent rect. 18 1
653 67.89 wind 3 14400 < th dose independent rect. 22 4
654 67.89 temperature 20 270 < th dose independent rect. 22 7
671 67.91 radiation 40 1440 > th dose dependent rect. 8 2
695 67.93 temperature 20 720 > th dose independent rect. 23 1
700 67.93 temperature 30 10 < th dose dependent rect. 22 21
703 67.94 wind 3 4320 < th dose independent rect. 19 5
707 67.94 wind 1 14400 > th dose dependent rect. 1 1
722 67.96 radiation 20 720 < th dose independent rect. 15 16
728 67.97 wind 1 10 < th dose independent rect. 22 3
729 67.97 radiation 40 4320 < th dose independent rect. 15 5
731 67.97 wind 3 4320 < th dose independent rect. 15 11
733 67.97 radiation 40 4320 < th dose independent rect. 15 14
753 68.00 temperature 20 720 < th dose independent rect. 23 2
755 68.00 radiation 40 4320 < th dose independent rect. 15 10
759 68.00 humidity 80 14400 > th dose dependent rect. 13 3
768 68.01 radiation 40 4320 < th dose independent rect. 15 16
770 68.01 humidity 80 14400 > th dose dependent rect. 15 1
772 68.01 temperature 10 30 > th dose dependent rect. 5 23
782 68.02 humidity 90 1440 > th dose dependent rect. 4 16
790 68.02 temperature 25 10 < th dose dependent rect. 23 19
806 68.03 wind 9 14400 < th dose independent rect. 6 5
813 68.03 wind 1 10 < th dose dependent rect. 22 3
826 68.04 wind 9 14400 > th dose dependent rect. 10 1
841 68.04 wind 1 10 < th dose dependent rect. 11 14
859 68.05 radiation 40 4320 < th dose independent rect. 15 1
871 68.05 wind 3 14400 < th dose dependent rect. 1 1
882 68.06 wind 3 4320 > th dose independent rect. 19 5
885 68.06 wind 3 4320 > th dose independent rect. 15 11
908 68.07 wind 5 1440 < th dose independent rect. 14 1
912 68.07 wind 9 4320 < th dose independent rect. 20 2
916 68.07 temperature 20 90 > th dose independent rect. 23 10
920 68.07 radiation 40 1440 > th dose dependent sin 11 NA
924 68.07 radiation 10 14400 < th dose dependent rect. 1 1
945 68.08 radiation 1 1440 > th dose independent rect. 7 1
947 68.08 temperature 20 720 < th dose independent rect. 22 5
977 68.09 radiation 20 270 > th dose independent rect. 6 1