Os04g0252000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Reverse transcriptase (Fragment).
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Os04g0252000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Reverse transcriptase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.78 | 0.698 | 2.96 | 0.197 | 0.49 | 0.263 | 3.34 | 2.92 | 0.0363 | 11.7 | 10.63 | 25 | -- | -- |
| 227.27 | 0.708 | 2.96 | 0.273 | 0.638 | 0.395 | 0.211 | -- | 0.0333 | 11.3 | 10.63 | 25 | -- | -- |
| 227.11 | 0.707 | 2.96 | 0.289 | 0.626 | 0.386 | -- | 0.242 | 0.0352 | 11.3 | 10.63 | 25 | -- | -- |
| 227.46 | 0.707 | 2.96 | 0.282 | 0.633 | 0.392 | -- | -- | 0.034 | 11.2 | 10.63 | 25 | -- | -- |
| 231.51 | 0.709 | 2.98 | 0.29 | -- | -0.0826 | -- | 0.359 | 0.0229 | -- | 20.82 | 37 | -- | -- |
| 229.98 | 0.711 | 2.97 | 0.278 | 0.207 | -- | 0.176 | -- | 0.0283 | 10.4 | -- | -- | -- | -- |
| 230.1 | 0.71 | 2.97 | 0.284 | 0.206 | -- | -- | -- | 0.0286 | 10.3 | -- | -- | -- | -- |
| 231.07 | 0.708 | 2.98 | 0.304 | -- | -0.127 | -- | -- | 0.0362 | -- | 2.049 | 81 | -- | -- |
| 229.55 | 0.71 | 2.97 | -- | 0.635 | 0.393 | -- | -- | 0.00351 | 11.2 | 10 | 21 | -- | -- |
| 232.7 | 0.713 | 2.98 | 0.281 | -- | -- | -- | -- | 0.0281 | -- | -- | -- | -- | -- |
| 232.23 | 0.713 | 2.98 | -- | 0.205 | -- | -- | -- | -0.00308 | 10.1 | -- | -- | -- | -- |
| 233.12 | 0.711 | 2.98 | -- | -- | -0.128 | -- | -- | -0.00978 | -- | 1.863 | 79 | -- | -- |
| 234.78 | 0.715 | 2.98 | -- | -- | -- | -- | -- | -0.00312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.72 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 209.76 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 3 | 209.79 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 6 | 209.79 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 9 | 210.29 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 14 | 210.57 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 37 | 211.91 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 50 | 213.25 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 62 | 214.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 83 | 215.77 | wind | 5.0 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 84 | 215.86 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 1 |
| 95 | 216.25 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 128 | 217.28 | wind | 7.0 | 90 | > th | dose independent | rect. | 16 | 19 |
| 144 | 217.66 | wind | 3.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 154 | 217.82 | wind | 3.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 180 | 218.19 | wind | 3.0 | 30 | < th | dose independent | rect. | 12 | 3 |
| 182 | 218.24 | radiation | 10.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 183 | 218.26 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 185 | 218.28 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 189 | 218.35 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 2 |
| 198 | 218.49 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 206 | 218.64 | wind | 7.0 | 90 | > th | dose independent | rect. | 16 | 7 |
| 217 | 218.75 | wind | 7.0 | 90 | > th | dose independent | rect. | 16 | 13 |
| 255 | 219.09 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 270 | 219.22 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 12 | 3 |
| 294 | 219.47 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 311 | 219.56 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 13 |
| 324 | 219.67 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 7 |
| 336 | 219.75 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 16 |
| 339 | 219.79 | wind | 5.0 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 364 | 219.92 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 16 | 23 |
| 393 | 220.09 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 398 | 220.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 441 | 220.29 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 462 | 220.40 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 7 |
| 485 | 220.47 | wind | 5.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 504 | 220.56 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 526 | 220.66 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 532 | 220.71 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 539 | 220.75 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 560 | 220.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 567 | 220.84 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 590 | 220.93 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 607 | 220.97 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 672 | 221.14 | wind | 3.0 | 10 | < th | dose dependent | rect. | 12 | 3 |
| 673 | 221.15 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 679 | 221.18 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 687 | 221.22 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 19 |
| 694 | 221.24 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 695 | 221.24 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 711 | 221.32 | wind | 5.0 | 720 | < th | dose independent | rect. | 4 | 7 |
| 757 | 221.49 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 769 | 221.52 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 10 | 21 |
| 771 | 221.53 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 17 |
| 792 | 221.58 | wind | 7.0 | 90 | < th | dose independent | rect. | 14 | 23 |
| 808 | 221.63 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 837 | 221.72 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 8 |
| 848 | 221.75 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 20 |
| 849 | 221.75 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 853 | 221.76 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 17 |
| 864 | 221.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 9 |
| 867 | 221.79 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 872 | 221.81 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 912 | 221.88 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 913 | 221.89 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 2 | 1 |
| 938 | 221.95 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 12 |
| 939 | 221.95 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 956 | 221.98 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 978 | 222.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 2 | 12 |