Os04g0250200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0250200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.59 | 0.31 | 9.43 | -1.6 | 0.967 | -1.18 | 0.755 | 0.0161 | 0.312 | 3.36 | 24.2 | 119 | -- | -- |
| 43.59 | 0.307 | 9.43 | -1.6 | 0.967 | -1.19 | 0.76 | -- | 0.312 | 3.36 | 24.2 | 119 | -- | -- |
| 45.04 | 0.313 | 9.44 | -1.67 | 0.967 | -1.13 | -- | 0.49 | 0.293 | 3.42 | 24.3 | 131 | -- | -- |
| 45.42 | 0.314 | 9.43 | -1.61 | 0.971 | -1.19 | -- | -- | 0.307 | 3.36 | 24.2 | 121 | -- | -- |
| 79.88 | 0.416 | 9.47 | -1.81 | -- | -1.08 | -- | 0.16 | 0.206 | -- | 27.37 | 2591 | -- | -- |
| 62.99 | 0.372 | 9.38 | -1.31 | 0.811 | -- | 0.822 | -- | 0.51 | 3.66 | -- | -- | -- | -- |
| 65.03 | 0.378 | 9.39 | -1.33 | 0.816 | -- | -- | -- | 0.505 | 3.68 | -- | -- | -- | -- |
| 79.02 | 0.414 | 9.45 | -1.66 | -- | -1.21 | -- | -- | 0.254 | -- | 28.54 | 1175 | -- | -- |
| 107.21 | 0.485 | 9.37 | -- | 0.857 | -0.514 | -- | -- | 0.58 | 3.44 | 24.2 | 13 | -- | -- |
| 101.89 | 0.472 | 9.39 | -1.29 | -- | -- | -- | -- | 0.527 | -- | -- | -- | -- | -- |
| 111.39 | 0.494 | 9.35 | -- | 0.789 | -- | -- | -- | 0.653 | 3.7 | -- | -- | -- | -- |
| 141.62 | 0.554 | 9.37 | -- | -- | -0.474 | -- | -- | 0.602 | -- | 35.5 | 1164 | -- | -- |
| 145.95 | 0.564 | 9.36 | -- | -- | -- | -- | -- | 0.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 6 | 43.64 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 8 | 43.65 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 10 | 43.65 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 11 | 43.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 23 | 43.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 25 | 43.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 33 | 43.86 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 35 | 43.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 47 | 43.93 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 48 | 43.93 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 53 | 43.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 54 | 43.95 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 60 | 43.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 65 | 44.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 75 | 44.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 119 | 44.21 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 139 | 44.26 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 142 | 44.28 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 154 | 44.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 176 | 44.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 231 | 44.47 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 248 | 44.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 261 | 44.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 262 | 44.54 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 269 | 44.56 | humidity | 50 | 43200 | > th | dose independent | sin | 6 | NA |
| 276 | 44.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 286 | 44.59 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 322 | 44.62 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 325 | 44.62 | humidity | 50 | 43200 | < th | dose dependent | sin | 4 | NA |
| 375 | 44.64 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 418 | 44.66 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 421 | 44.66 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 426 | 44.67 | humidity | 50 | 43200 | < th | dose independent | sin | 6 | NA |
| 453 | 44.68 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 466 | 44.69 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 517 | 44.73 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 552 | 44.77 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 588 | 44.79 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 593 | 44.79 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 632 | 44.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 22 |
| 736 | 44.85 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 761 | 44.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 762 | 44.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 849 | 44.93 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 870 | 44.95 | humidity | 50 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 881 | 44.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 921 | 45.03 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 957 | 45.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 961 | 45.07 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |