Os04g0247500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0247500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.21 | 0.298 | 11.8 | -0.538 | 0.515 | -0.237 | 0.00295 | -1.04 | -0.224 | 19.2 | 1010 | 4814 | -- | -- |
| 41.99 | 0.302 | 11.8 | -0.815 | 0.532 | -0.238 | -0.027 | -- | -0.256 | 19.2 | 1010 | 19089 | -- | -- |
| 39.98 | 0.294 | 11.8 | -0.546 | 0.515 | -0.243 | -- | -1.07 | -0.23 | 19.2 | 1011 | 4699 | -- | -- |
| 41.83 | 0.301 | 11.9 | -0.823 | 0.509 | -0.228 | -- | -- | -0.271 | 19.2 | 1011 | 18985 | -- | -- |
| 53.95 | 0.342 | 11.8 | -0.544 | -- | -0.219 | -- | -1.07 | -0.228 | -- | 1011 | 4582 | -- | -- |
| 43.68 | 0.31 | 11.8 | -0.752 | 0.508 | -- | -0.0771 | -- | -0.238 | 19.3 | -- | -- | -- | -- |
| 43.7 | 0.31 | 11.8 | -0.75 | 0.508 | -- | -- | -- | -0.239 | 19.3 | -- | -- | -- | -- |
| 55.51 | 0.347 | 11.8 | -0.84 | -- | -0.224 | -- | -- | -0.284 | -- | 1011 | 19190 | -- | -- |
| 58.37 | 0.356 | 11.8 | -- | 0.516 | -0.0677 | -- | -- | -0.175 | 19.2 | 1011 | 15931 | -- | -- |
| 57.37 | 0.354 | 11.8 | -0.759 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 58.53 | 0.358 | 11.8 | -- | 0.515 | -- | -- | -- | -0.155 | 19.2 | -- | -- | -- | -- |
| 68.67 | 0.386 | 11.8 | -- | -- | 0.318 | -- | -- | -0.0766 | -- | 1010 | 47520 | -- | -- |
| 72.57 | 0.398 | 11.8 | -- | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 2 | 36.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 32 | 37.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 45 | 38.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 60 | 38.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 64 | 38.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 72 | 38.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 87 | 38.64 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 111 | 38.74 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 130 | 38.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 182 | 39.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 187 | 39.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 192 | 39.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 195 | 39.07 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 201 | 39.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 207 | 39.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 213 | 39.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 231 | 39.10 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 240 | 39.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 242 | 39.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 259 | 39.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 292 | 39.18 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 303 | 39.20 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 332 | 39.27 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 348 | 39.29 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 354 | 39.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 387 | 39.37 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 11 |
| 403 | 39.40 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 407 | 39.40 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 413 | 39.43 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 434 | 39.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 442 | 39.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 448 | 39.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 454 | 39.49 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 463 | 39.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 467 | 39.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 482 | 39.51 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 500 | 39.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 543 | 39.55 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 21 |
| 601 | 39.63 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 620 | 39.65 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 631 | 39.66 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 636 | 39.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 668 | 39.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 670 | 39.68 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 673 | 39.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 716 | 39.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 11 | 19 |
| 740 | 39.73 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 11 |
| 750 | 39.74 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 751 | 39.74 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 755 | 39.75 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 771 | 39.76 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 796 | 39.77 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 798 | 39.77 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 23 |
| 800 | 39.77 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 804 | 39.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 809 | 39.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 813 | 39.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 820 | 39.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 837 | 39.80 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 13 |
| 853 | 39.81 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 864 | 39.81 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 869 | 39.81 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 21 |
| 892 | 39.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 910 | 39.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 914 | 39.84 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 21 |
| 925 | 39.84 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 956 | 39.87 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 15 | 6 |
| 962 | 39.87 | radiation | 40.0 | 720 | < th | dose independent | rect. | 18 | 15 |