Os04g0244500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF171 family protein.
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Os04g0244500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF171 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.89 | 0.248 | 11.3 | -0.528 | 0.201 | -1.15 | -0.37 | 1.2 | -1.07 | 1.95 | 30.5 | 91 | -- | -- |
| 29.15 | 0.251 | 11.3 | -0.333 | 0.231 | -1.18 | -0.0553 | -- | -1.03 | 1.67 | 29.7 | 72 | -- | -- |
| 28.28 | 0.248 | 11.3 | -0.469 | 0.19 | -1.14 | -- | 0.908 | -1.05 | 1.85 | 30.37 | 99 | -- | -- |
| 29.04 | 0.251 | 11.3 | -0.324 | 0.21 | -1.14 | -- | -- | -1.02 | 1.66 | 29.63 | 94 | -- | -- |
| 29.97 | 0.255 | 11.3 | -0.421 | -- | -0.976 | -- | 0.911 | -1.02 | -- | 30.31 | 125 | -- | -- |
| 46.36 | 0.319 | 11.2 | -0.0425 | 0.185 | -- | 0.277 | -- | -0.797 | 16.5 | -- | -- | -- | -- |
| 46.56 | 0.32 | 11.2 | -0.0404 | 0.187 | -- | -- | -- | -0.795 | 16.4 | -- | -- | -- | -- |
| 30.55 | 0.257 | 11.3 | -0.297 | -- | -0.992 | -- | -- | -1.01 | -- | 27.45 | 229 | -- | -- |
| 31.53 | 0.262 | 11.3 | -- | 0.169 | -1 | -- | -- | -0.963 | 1.08 | 29.7 | 83 | -- | -- |
| 48.44 | 0.325 | 11.2 | -0.0477 | -- | -- | -- | -- | -0.8 | -- | -- | -- | -- | -- |
| 46.61 | 0.319 | 11.2 | -- | 0.188 | -- | -- | -- | -0.791 | 16.4 | -- | -- | -- | -- |
| 32.65 | 0.266 | 11.3 | -- | -- | -0.886 | -- | -- | -0.955 | -- | 28.1 | 212 | -- | -- |
| 48.5 | 0.325 | 11.2 | -- | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 2 | 27.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 27.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 8 | 27.91 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 9 | 27.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 27.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 12 | 27.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 13 | 28.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 23 | 28.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 30 | 28.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 36 | 28.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 45 | 28.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 53 | 28.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 57 | 28.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 91 | 28.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 97 | 28.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 127 | 28.40 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 131 | 28.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 174 | 28.56 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 237 | 28.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 253 | 28.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 306 | 28.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 405 | 29.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 511 | 29.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 541 | 29.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 574 | 29.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 584 | 29.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 622 | 29.44 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 634 | 29.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 653 | 29.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 676 | 29.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 700 | 29.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 703 | 29.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 719 | 29.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 746 | 29.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 764 | 29.62 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 783 | 29.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 802 | 29.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 813 | 29.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 878 | 29.74 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 893 | 29.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 919 | 29.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |