Os04g0231800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Four-helical cytokine family protein.
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Os04g0231800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Four-helical cytokine family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.46 | 0.457 | 11.5 | -1.51 | 2.65 | -1.17 | 1.7 | 1.62 | 0.244 | 7.67 | 3.186 | 1438 | -- | -- |
| 97.25 | 0.459 | 11.5 | -1.32 | 2.61 | -1.29 | 1.69 | -- | 0.261 | 7.69 | 2.724 | 1436 | -- | -- |
| 101.94 | 0.47 | 11.5 | -1.48 | 2.76 | -1.15 | -- | 1.8 | 0.247 | 7.86 | 3.105 | 1387 | -- | -- |
| 105 | 0.477 | 11.5 | -1.29 | 2.64 | -1.34 | -- | -- | 0.271 | 7.64 | 2.576 | 1440 | -- | -- |
| 412.02 | 0.951 | 11.5 | -0.97 | -- | -0.963 | -- | -0.155 | 0.5 | -- | 3.39 | 1522 | -- | -- |
| 119.6 | 0.513 | 11.4 | -1.04 | 2.67 | -- | 1.61 | -- | 0.496 | 7.66 | -- | -- | -- | -- |
| 126.9 | 0.528 | 11.4 | -1 | 2.67 | -- | -- | -- | 0.494 | 7.68 | -- | -- | -- | -- |
| 412.18 | 0.95 | 11.5 | -0.971 | -- | -0.963 | -- | -- | 0.499 | -- | 3.39 | 1522 | -- | -- |
| 139.23 | 0.55 | 11.4 | -- | 2.67 | -0.73 | -- | -- | 0.467 | 7.78 | 9.833 | 1416 | -- | -- |
| 511.49 | 1.06 | 11.5 | -0.969 | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
| 153.49 | 0.58 | 11.4 | -- | 2.66 | -- | -- | -- | 0.606 | 7.7 | -- | -- | -- | -- |
| 436.09 | 0.976 | 11.5 | -- | -- | -0.991 | -- | -- | 0.606 | -- | 5.82 | 1520 | -- | -- |
| 536.25 | 1.08 | 11.5 | -- | -- | -- | -- | -- | 0.641 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 11 | 90.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 35 | 91.53 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 38 | 91.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 60 | 92.43 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 64 | 92.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 88 | 93.06 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 111 | 93.52 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 112 | 93.64 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 131 | 94.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 135 | 94.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 168 | 94.79 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 170 | 94.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 173 | 94.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 181 | 94.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 188 | 94.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 220 | 95.25 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 223 | 95.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 274 | 95.42 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 16 |
| 286 | 95.44 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 291 | 95.45 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 374 | 95.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 435 | 96.24 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 465 | 96.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 486 | 96.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 489 | 96.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 506 | 96.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 510 | 96.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 544 | 96.56 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 11 |
| 565 | 96.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 569 | 96.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 570 | 96.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 571 | 96.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 614 | 96.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 633 | 96.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 642 | 96.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 666 | 96.81 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 675 | 96.85 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 707 | 96.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 719 | 96.95 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 746 | 97.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 810 | 97.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 820 | 97.14 | humidity | 70 | 720 | > th | dose dependent | sin | 17 | NA |
| 823 | 97.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 828 | 97.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 860 | 97.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 865 | 97.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 867 | 97.29 | humidity | 70 | 1440 | > th | dose dependent | sin | 1 | NA |
| 868 | 97.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 871 | 97.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 894 | 97.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 909 | 97.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 929 | 97.40 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 937 | 97.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 1000 | 97.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |