Os04g0231200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0231200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.39 | 0.271 | 8.47 | -0.709 | 0.743 | -2.52 | -0.389 | -4.23 | 0.371 | 22.1 | 19.36 | 4371 | -- | -- |
| 37.08 | 0.284 | 8.56 | -0.744 | 0.708 | -0.933 | -0.237 | -- | 0.24 | 22.4 | 24.13 | 1983 | -- | -- |
| 33.91 | 0.271 | 8.46 | -0.706 | 0.749 | -2.73 | -- | -4.66 | 0.37 | 22.2 | 19.12 | 4406 | -- | -- |
| 35.28 | 0.277 | 8.58 | -0.679 | 0.723 | -0.803 | -- | -- | 0.292 | 22.2 | 26.91 | 3078 | -- | -- |
| 65.91 | 0.378 | 8.45 | -0.756 | -- | -2.65 | -- | -4.33 | 0.344 | -- | 19.96 | 5155 | -- | -- |
| 45.86 | 0.317 | 8.53 | -0.349 | 0.738 | -- | -0.368 | -- | 0.496 | 22.2 | -- | -- | -- | -- |
| 46.39 | 0.319 | 8.53 | -0.335 | 0.739 | -- | -- | -- | 0.496 | 22.3 | -- | -- | -- | -- |
| 55.02 | 0.345 | 8.58 | -0.617 | -- | -1.2 | -- | -- | 0.237 | -- | 29.7 | 805 | -- | -- |
| 44.45 | 0.311 | 8.54 | -- | 0.684 | -0.466 | -- | -- | 0.458 | 22.2 | 33.98 | 2286 | -- | -- |
| 79.65 | 0.417 | 8.51 | -0.324 | -- | -- | -- | -- | 0.498 | -- | -- | -- | -- | -- |
| 49.35 | 0.329 | 8.53 | -- | 0.738 | -- | -- | -- | 0.533 | 22.3 | -- | -- | -- | -- |
| 65.26 | 0.376 | 8.54 | -- | -- | -0.963 | -- | -- | 0.376 | -- | 30.1 | 783 | -- | -- |
| 82.42 | 0.424 | 8.51 | -- | -- | -- | -- | -- | 0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.06 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 70 | 32.95 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 96 | 33.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 97 | 33.07 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 99 | 33.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 103 | 33.09 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 104 | 33.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 105 | 33.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 119 | 33.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 120 | 33.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 121 | 33.14 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 122 | 33.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 186 | 33.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 203 | 33.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 210 | 33.35 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 214 | 33.36 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 222 | 33.37 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 271 | 33.45 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 272 | 33.45 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 282 | 33.46 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 315 | 33.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 345 | 33.55 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 357 | 33.56 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 370 | 33.56 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 16 |
| 439 | 33.61 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 454 | 33.62 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 482 | 33.64 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 511 | 33.65 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 10 | 22 |
| 513 | 33.66 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 528 | 33.67 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 560 | 33.68 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 2 | 22 |
| 568 | 33.69 | atmosphere | 1010.0 | 4320 | > th | dose dependent | no | NA | NA |
| 573 | 33.69 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 2 | 19 |
| 586 | 33.69 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 673 | 33.74 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 675 | 33.74 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 699 | 33.75 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 700 | 33.76 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 703 | 33.76 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 742 | 33.77 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 759 | 33.79 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 783 | 33.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 788 | 33.80 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 799 | 33.81 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 816 | 33.82 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 830 | 33.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 836 | 33.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 843 | 33.83 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 847 | 33.83 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 868 | 33.85 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 884 | 33.86 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 908 | 33.87 | radiation | 10.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 913 | 33.87 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 988 | 33.90 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |