Os04g0229100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sinapyl alcohol dehydrogenase.
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Os04g0229100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sinapyl alcohol dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 481.21 | 1.03 | 9.29 | -1.1 | 1.07 | -2.58 | -0.69 | 2.82 | 0.455 | 8.59 | 1.039 | 4326 | -- | -- |
| 488.58 | 1.03 | 9.24 | -0.506 | 1.06 | -3.1 | -0.588 | -- | 0.543 | 8.42 | 1.011 | 4322 | -- | -- |
| 479.95 | 1.02 | 9.31 | -1.29 | 0.996 | -2.65 | -- | 3.78 | 0.416 | 7.55 | 1.06 | 4391 | -- | -- |
| 489.17 | 1.03 | 9.22 | -0.557 | 1.1 | -3.04 | -- | -- | 0.566 | 8.27 | 0.8785 | 4324 | -- | -- |
| 531.69 | 1.07 | 9.34 | -1.21 | -- | -2.74 | -- | 3.85 | 0.416 | -- | 1.241 | 4421 | -- | -- |
| 683.3 | 1.23 | 9.09 | 0.47 | 1.08 | -- | -0.739 | -- | 1.15 | 8.59 | -- | -- | -- | -- |
| 684.5 | 1.23 | 9.09 | 0.442 | 1.09 | -- | -- | -- | 1.14 | 8.24 | -- | -- | -- | -- |
| 543.96 | 1.09 | 9.26 | -0.544 | -- | -3.18 | -- | -- | 0.579 | -- | 0.6601 | 4381 | -- | -- |
| 497.63 | 1.04 | 9.21 | -- | 1.08 | -2.86 | -- | -- | 0.633 | 8.44 | 1.02 | 4322 | -- | -- |
| 750.53 | 1.28 | 9.12 | 0.45 | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
| 689.66 | 1.23 | 9.1 | -- | 1.1 | -- | -- | -- | 1.1 | 8.21 | -- | -- | -- | -- |
| 552.43 | 1.09 | 9.22 | -- | -- | -3.14 | -- | -- | 0.631 | -- | 1.02 | 4381 | -- | -- |
| 755.87 | 1.28 | 9.13 | -- | -- | -- | -- | -- | 1.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 461.77 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 462.54 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 466.10 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 6 | 468.18 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 8 | 469.22 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 16 |
| 9 | 469.58 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 10 | 469.62 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 12 | 469.74 | radiation | 20 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 13 | 469.81 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 17 | 470.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 25 | 470.82 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 28 | 470.99 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 36 | 471.26 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 40 | 471.41 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 47 | 471.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 50 | 471.78 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 55 | 471.89 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 67 | 472.35 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 70 | 472.47 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 98 | 473.47 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 101 | 473.52 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 102 | 473.52 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 106 | 473.59 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 128 | 473.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 129 | 473.92 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 130 | 473.95 | radiation | 1 | 4320 | < th | dose dependent | sin | 12 | NA |
| 141 | 474.12 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 147 | 474.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 223 | 475.59 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 242 | 475.88 | wind | 7 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 258 | 476.07 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 262 | 476.12 | radiation | 1 | 4320 | > th | dose independent | sin | 12 | NA |
| 336 | 477.07 | radiation | 1 | 4320 | < th | dose independent | sin | 12 | NA |
| 349 | 477.30 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 364 | 477.58 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 22 |
| 395 | 477.95 | temperature | 15 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 396 | 477.97 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 412 | 478.15 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 434 | 478.37 | wind | 7 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 439 | 478.45 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 453 | 478.52 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 455 | 478.56 | wind | 7 | 14400 | > th | dose independent | sin | 2 | NA |
| 487 | 478.89 | wind | 7 | 14400 | < th | dose independent | sin | 2 | NA |
| 497 | 478.93 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 498 | 478.94 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 555 | 479.49 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 571 | 479.64 | radiation | 10 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 587 | 479.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 601 | 479.79 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 611 | 479.84 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 617 | 479.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 635 | 480.01 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 636 | 480.02 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 638 | 480.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 652 | 480.16 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 653 | 480.17 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 657 | 480.20 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 675 | 480.30 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 687 | 480.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 722 | 480.62 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 734 | 480.75 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 746 | 480.85 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 779 | 481.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 781 | 481.04 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 796 | 481.15 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 18 |
| 798 | 481.17 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 16 |
| 853 | 481.35 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 857 | 481.38 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 876 | 481.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 894 | 481.70 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 900 | 481.75 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 927 | 481.92 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 960 | 482.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 22 |