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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0228400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Expansin precursor (Alpha-expansin OsEXPA1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0533) R2 : 0.527
β1 : -0.943 (0.196) R2dD : 0.0253 R2D : -0.0168
β2 : 1.63 (0.138) R2dC : 0.145 R2C : 0.12
β3 : 4.25 (0.219) R2dE : 0.421 R2E : 0.322
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.561 (0.116) R2dN8 : 0.0354 R2N8 : -0.0209
σ : 0.99
deviance : 451.66
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_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : 21.04
memory length : 284
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.8
open length of G : 14.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.71 0.992 4.22 -1.16 1.56 4.27 -1.37 -1.68 -0.641 18.1 21.01 277 23.8 14.8
447.3 0.985 4.21 -0.991 1.59 4.2 -1.65 -- -0.595 17.9 21.06 276 23.8 14.8
449.66 0.988 4.23 -1.17 1.59 4.3 -- -1.83 -0.648 18.1 21.09 281 23.7 14.8
451.66 0.99 4.19 -0.943 1.63 4.25 -- -- -0.561 18.1 21.04 284 23.8 14.5
513.08 1.05 4.21 -1.15 -- 4.55 -- -1.75 -0.612 -- 22.17 290 0.867 14.8
671.55 1.21 4.05 -0.311 2.2 -- -0.546 -- -0.0501 15 -- -- -- --
672.52 1.21 4.05 -0.323 2.2 -- -- -- -0.0534 15 -- -- -- --
488.88 1.03 4.09 -0.894 -- 4.26 -- -- -0.378 -- 21.01 296 7.52 7.97
474.33 1.01 4.18 -- 1.59 4.11 -- -- -0.478 17.8 21.3 281 23.9 14.5
950.15 1.44 4.06 -0.417 -- -- -- -- -0.111 -- -- -- -- --
675.27 1.22 4.05 -- 2.21 -- -- -- -0.0174 15 -- -- -- --
498.98 1.04 4.08 -- -- 4.53 -- -- -0.197 -- 19.24 367 7.84 6.47
954.74 1.44 4.05 -- -- -- -- -- -0.0643 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 449.85 temperature 20 270 > th dose dependent rect. 24 15
28 471.99 temperature 20 270 > th dose dependent sin 4 NA
31 474.77 temperature 30 270 < th dose dependent rect. 5 14
33 475.63 temperature 20 270 > th dose dependent rect. 8 7
49 481.17 temperature 30 270 < th dose dependent rect. 4 7
54 482.73 temperature 30 270 < th dose dependent sin 2 NA
95 490.85 temperature 25 270 > th dose independent rect. 8 8
171 500.91 temperature 25 270 < th dose independent rect. 5 14
189 503.02 temperature 25 270 < th dose independent rect. 5 6
218 506.12 temperature 25 270 > th dose independent rect. 24 15
229 507.12 temperature 20 10 > th dose dependent rect. 2 15
261 509.28 temperature 25 270 > th dose independent sin 1 NA
330 514.94 temperature 10 270 > th dose dependent rect. 8 22
333 515.55 temperature 25 270 > th dose dependent rect. 11 1
350 516.31 temperature 25 270 < th dose independent sin 1 NA
409 519.88 atmosphere 1015 270 < th dose dependent rect. 9 6
411 519.91 temperature 25 10 > th dose dependent rect. 11 6
545 526.00 temperature 25 10 > th dose dependent rect. 9 8
598 527.62 temperature 30 720 < th dose dependent rect. 22 14
694 531.32 temperature 30 10 < th dose dependent rect. 6 7
746 532.74 temperature 30 10 < th dose dependent rect. 7 15
811 534.23 temperature 30 270 < th dose dependent rect. 14 22
852 535.00 atmosphere 995 270 > th dose dependent rect. 5 15
926 536.92 atmosphere 1010 270 < th dose independent rect. 9 7