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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0228300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0391) R2 : 0.202
β1 : -1.54 (0.143) R2dD : 0.209 R2D : 0.187
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.211 (0.0835) R2dN8 : 0.0149 R2N8 : -0.00717
σ : 0.734
deviance : 246.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.62 0.674 3.88 -0.964 0.482 0.522 -1.79 -2.59 0.00444 6.71 25.7 10 -- --
212.4 0.679 3.94 -1.33 0.487 1.16 -2.19 -- -0.146 5.79 20.68 5 -- --
213.74 0.681 3.87 -0.983 0.475 0.505 -- -2.66 0.0128 6.73 25.8 16 -- --
221.34 0.693 3.93 -1.32 0.475 1.28 -- -- -0.123 6.59 20.86 109 -- --
221.28 0.693 3.86 -0.816 -- 0.538 -- -3.45 0.0722 -- 26.7 255 -- --
222.17 0.699 3.96 -1.55 0.52 -- -2.15 -- -0.233 5.46 -- -- -- --
233.42 0.715 3.95 -1.55 0.512 -- -- -- -0.222 5.9 -- -- -- --
233.02 0.711 3.94 -1.3 -- 1.31 -- -- -0.107 -- 21.05 127 -- --
262.19 0.754 3.88 -- 0.452 2.12 -- -- 0.0604 6.93 20.6 222 -- --
246.98 0.734 3.96 -1.54 -- -- -- -- -0.211 -- -- -- -- --
297.07 0.806 3.91 -- 0.488 -- -- -- -0.0494 6.06 -- -- -- --
271.46 0.767 3.89 -- -- 2.2 -- -- 0.0782 -- 20.7 229 -- --
309.44 0.821 3.92 -- -- -- -- -- -0.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.30 temperature 25 90 < th dose dependent rect. 15 20
2 201.47 temperature 25 90 < th dose dependent rect. 13 22
6 202.04 temperature 25 270 < th dose dependent rect. 11 21
10 202.23 temperature 20 720 > th dose dependent rect. 16 8
11 202.28 temperature 15 90 > th dose dependent sin 9 NA
14 202.42 temperature 15 270 > th dose dependent sin 11 NA
18 202.58 temperature 25 90 < th dose dependent sin 9 NA
21 202.62 temperature 25 90 < th dose dependent rect. 20 15
27 202.73 temperature 20 30 > th dose independent rect. 20 18
30 202.78 temperature 25 10 < th dose dependent rect. 12 23
33 202.81 temperature 20 270 > th dose dependent rect. 17 15
47 202.94 temperature 20 30 > th dose independent rect. 20 16
72 203.16 temperature 20 270 > th dose independent rect. 17 19
78 203.20 temperature 20 270 < th dose independent sin 10 NA
86 203.36 temperature 20 270 > th dose independent sin 9 NA
108 203.49 temperature 20 270 < th dose independent rect. 20 11
116 203.52 temperature 30 270 < th dose dependent rect. 19 12
135 203.66 temperature 30 720 < th dose dependent rect. 18 6
159 203.79 temperature 15 270 > th dose dependent rect. 16 20
160 203.80 temperature 20 90 < th dose independent rect. 21 14
205 204.08 temperature 20 720 > th dose dependent rect. 20 1
211 204.14 temperature 15 270 > th dose dependent rect. 17 18
257 204.43 temperature 25 720 < th dose dependent rect. 21 2
260 204.46 temperature 20 30 > th dose independent rect. 13 23
264 204.49 temperature 20 30 > th dose independent rect. 18 20
271 204.51 temperature 25 90 < th dose dependent rect. 23 12
286 204.60 temperature 20 270 < th dose independent rect. 10 21
312 204.73 temperature 20 30 > th dose dependent rect. 20 9
328 204.78 temperature 20 720 < th dose independent rect. 21 3
331 204.81 temperature 20 90 < th dose independent rect. 23 12
414 205.11 temperature 20 720 < th dose independent rect. 22 1
473 205.30 temperature 15 10 > th dose dependent rect. 20 16
475 205.32 wind 1 720 < th dose independent rect. 22 3
477 205.33 temperature 20 90 < th dose independent rect. 13 22
561 205.56 temperature 20 90 > th dose independent rect. 6 23
580 205.63 temperature 20 90 < th dose independent rect. 20 22
581 205.63 temperature 20 720 > th dose dependent sin 15 NA
586 205.66 temperature 20 90 < th dose independent rect. 20 19
606 205.72 temperature 25 10 < th dose dependent rect. 5 23
609 205.73 temperature 25 90 < th dose dependent rect. 20 23
616 205.74 temperature 15 10 > th dose dependent rect. 18 20
617 205.74 temperature 25 10 < th dose dependent rect. 20 23
642 205.83 temperature 20 30 > th dose dependent rect. 20 12
688 205.94 temperature 25 10 < th dose dependent rect. 17 23
692 205.95 temperature 25 10 < th dose dependent no NA NA
738 206.05 temperature 25 10 < th dose dependent rect. 9 23
744 206.06 temperature 25 10 < th dose dependent rect. 23 23
765 206.11 temperature 25 10 < th dose dependent rect. 3 23
789 206.17 temperature 20 10 > th dose dependent rect. 18 18
803 206.21 temperature 25 30 < th dose dependent rect. 1 23
829 206.26 temperature 25 30 < th dose dependent rect. 7 23
903 206.43 temperature 15 10 > th dose dependent rect. 20 18
927 206.51 temperature 20 90 < th dose independent rect. 3 23
936 206.53 wind 1 720 < th dose independent rect. 23 1
960 206.58 temperature 20 90 > th dose independent no NA NA