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Os04g0227000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.0334) R2 : 0.5
β1 : 1.86 (0.123) R2dD : 0.265 R2D : 0.128
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.81 (0.114) R2dE : 0.29 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.626 (0.0718) R2dN8 : 0.117 R2N8 : -0.0021
σ : 0.624
deviance : 179.32
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C
peak time of C : --
E
wheather : temperature
threshold : 18.19
memory length : 91
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.5
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.77 0.598 7.13 2.23 0.807 -1.8 1.17 2.27 0.766 2.55 18.6 242 8.92 --
164.56 0.597 7.18 1.96 0.806 -1.99 1.51 -- 0.685 1.18 17.2 251 9.52 --
166.14 0.6 7.13 2.25 0.886 -1.86 -- 2.74 0.783 2.35 17.6 241 8.84 --
172.93 0.612 7.19 1.89 0.784 -1.69 -- -- 0.642 2.77 18.31 257 9.28 --
180.78 0.626 7.15 2.2 -- -1.88 -- 2.49 0.744 -- 19.39 120 9.71 --
208.77 0.677 7.19 1.59 1.18 -- 0.147 -- 0.461 6.33 -- -- -- --
208.81 0.677 7.19 1.6 1.18 -- -- -- 0.461 6.36 -- -- -- --
179.32 0.624 7.18 1.86 -- -1.81 -- -- 0.626 -- 18.19 91 10.5 --
258.94 0.749 7.23 -- 0.809 -1.05 -- -- 0.383 4.76 20.11 312 9.83 --
280.93 0.783 7.22 1.63 -- -- -- -- 0.486 -- -- -- -- --
275.98 0.777 7.23 -- 1.2 -- -- -- 0.283 6.29 -- -- -- --
268.13 0.763 7.24 -- -- -1.55 -- -- 0.357 -- 9.57 70 11.4 --
350.78 0.874 7.26 -- -- -- -- -- 0.306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.26 temperature 20 270 > th dose dependent rect. 14 11
3 163.53 temperature 20 270 > th dose dependent sin 15 NA
22 165.82 temperature 10 720 > th dose dependent rect. 13 6
28 166.10 temperature 20 720 > th dose dependent rect. 13 6
45 167.20 temperature 30 270 < th dose dependent rect. 15 14
61 167.84 temperature 30 270 < th dose dependent sin 15 NA
65 167.93 temperature 10 720 > th dose dependent rect. 11 8
121 169.57 temperature 25 270 > th dose independent rect. 14 11
151 170.20 temperature 10 720 > th dose dependent sin 20 NA
158 170.38 temperature 20 720 > th dose dependent sin 20 NA
183 170.81 temperature 10 720 > th dose dependent rect. 7 18
190 170.86 temperature 10 720 > th dose dependent rect. 7 16
194 170.93 temperature 20 10 > th dose dependent rect. 16 12
276 172.01 temperature 25 270 > th dose independent sin 16 NA
315 172.40 temperature 30 720 < th dose dependent rect. 10 11
543 174.34 temperature 20 10 > th dose independent rect. 16 12
577 174.54 temperature 30 720 < th dose independent rect. 12 17
590 174.61 temperature 25 720 > th dose dependent rect. 12 21
694 175.15 temperature 20 10 > th dose independent sin 13 NA
715 175.28 temperature 30 720 < th dose dependent sin 20 NA
722 175.31 temperature 30 720 < th dose independent rect. 10 12
727 175.33 temperature 30 720 < th dose independent rect. 1 14
751 175.45 temperature 30 720 < th dose independent rect. 12 9
763 175.52 temperature 30 720 < th dose independent rect. 17 22
774 175.64 temperature 25 270 < th dose independent sin 16 NA
784 175.72 temperature 30 720 < th dose independent rect. 19 20
910 176.49 temperature 30 720 < th dose independent rect. 3 12
970 176.86 temperature 30 720 < th dose independent sin 19 NA