Os04g0226600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase 4.
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Os04g0226600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.6 | 0.386 | 9.05 | -0.692 | 1.24 | -0.711 | 0.559 | -2.96 | -0.15 | 22.7 | 9.844 | 1383 | -- | -- |
| 75.18 | 0.404 | 8.97 | -0.0474 | 1.23 | -0.68 | 0.589 | -- | 0.00141 | 22.5 | 10.52 | 1489 | -- | -- |
| 68.67 | 0.386 | 9.05 | -0.714 | 1.22 | -0.706 | -- | -2.94 | -0.148 | 22.6 | 9.229 | 1548 | -- | -- |
| 75.66 | 0.405 | 8.96 | -0.0204 | 1.25 | -0.684 | -- | -- | 0.0257 | 22.7 | 8.907 | 2712 | -- | -- |
| 144.17 | 0.562 | 8.96 | -0.286 | -- | -1.33 | -- | -1.9 | 0.000845 | -- | 9.229 | 1548 | -- | -- |
| 84.24 | 0.43 | 9 | -0.276 | 1.21 | -- | 0.448 | -- | -0.113 | 22.5 | -- | -- | -- | -- |
| 85.06 | 0.432 | 9 | -0.294 | 1.2 | -- | -- | -- | -0.114 | 22.5 | -- | -- | -- | -- |
| 147.23 | 0.568 | 8.92 | -0.0242 | -- | -1.37 | -- | -- | 0.073 | -- | 8.907 | 2712 | -- | -- |
| 75.66 | 0.405 | 8.96 | -- | 1.25 | -0.692 | -- | -- | 0.0296 | 22.7 | 8.899 | 2711 | -- | -- |
| 174.22 | 0.617 | 8.96 | -0.273 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 87.35 | 0.437 | 8.99 | -- | 1.2 | -- | -- | -- | -0.0816 | 22.5 | -- | -- | -- | -- |
| 147.25 | 0.567 | 8.92 | -- | -- | -1.37 | -- | -- | 0.0765 | -- | 8.907 | 2712 | -- | -- |
| 176.19 | 0.62 | 8.96 | -- | -- | -- | -- | -- | -0.0789 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 6 | 66.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 15 | 66.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 137 | 67.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 140 | 67.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 19 |
| 142 | 67.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 149 | 67.53 | temperature | 25 | 4320 | < th | dose dependent | sin | 7 | NA |
| 154 | 67.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 191 | 67.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 252 | 67.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 287 | 67.64 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 378 | 67.71 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 446 | 67.76 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 447 | 67.76 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 465 | 67.77 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 466 | 67.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 527 | 67.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 536 | 67.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 559 | 67.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 580 | 67.85 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 662 | 67.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 680 | 67.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 725 | 67.93 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 754 | 67.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 762 | 67.95 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 763 | 67.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 786 | 67.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 791 | 67.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 881 | 67.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 882 | 67.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 894 | 68.00 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |