Os04g0224000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0224000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.3 | 0.371 | 10.7 | 0.827 | 2.7 | 0.392 | 0.682 | -1.33 | 0.107 | 15.5 | 20 | 1296 | -- | -- |
| 65.12 | 0.376 | 10.7 | 0.739 | 2.7 | 0.36 | 0.458 | -- | 0.0476 | 15.4 | 67.76 | 1270 | -- | -- |
| 63.64 | 0.372 | 10.7 | 0.823 | 2.71 | 0.383 | -- | -1.09 | 0.115 | 15.4 | 20 | 1339 | -- | -- |
| 65.73 | 0.378 | 10.7 | 0.701 | 2.7 | 0.341 | -- | -- | 0.0582 | 15.5 | 133.6 | 1276 | -- | -- |
| 333.62 | 0.855 | 10.7 | 0.54 | -- | -1.37 | -- | -0.11 | -0.0711 | -- | 19.65 | 1303 | -- | -- |
| 68.45 | 0.388 | 10.7 | 0.643 | 2.73 | -- | 0.509 | -- | -0.0199 | 15.3 | -- | -- | -- | -- |
| 69.27 | 0.39 | 10.7 | 0.653 | 2.74 | -- | -- | -- | -0.0169 | 15.3 | -- | -- | -- | -- |
| 165.61 | 0.599 | 10.8 | -0.3 | -- | -3.89 | -- | -- | -0.175 | -- | 0.9409 | 1908 | -- | -- |
| 78.48 | 0.413 | 10.7 | -- | 2.69 | 0.244 | -- | -- | -0.0378 | 15.4 | 419.9 | 1277 | -- | -- |
| 491.48 | 1.04 | 10.7 | 0.537 | -- | -- | -- | -- | -0.0891 | -- | -- | -- | -- | -- |
| 80.51 | 0.42 | 10.8 | -- | 2.72 | -- | -- | -- | -0.0897 | 15.3 | -- | -- | -- | -- |
| 156.45 | 0.583 | 10.8 | -- | -- | -3.98 | -- | -- | -0.379 | -- | 1.14 | 1908 | -- | -- |
| 499.09 | 1.04 | 10.8 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 19 | 53.31 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 29 | 54.28 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 45 | 55.07 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 59 | 55.52 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 63 | 55.68 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 65 | 55.71 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 21 |
| 66 | 55.71 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 69 | 55.79 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 73 | 55.82 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 74 | 55.82 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 81 | 55.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 89 | 56.02 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 104 | 56.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 109 | 56.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 111 | 56.37 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 113 | 56.39 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 116 | 56.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 117 | 56.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 13 |
| 123 | 56.48 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 125 | 56.48 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 126 | 56.48 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 129 | 56.48 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 130 | 56.48 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 132 | 56.48 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 135 | 56.48 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 165 | 56.70 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 172 | 56.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 173 | 56.82 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 192 | 56.87 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 193 | 56.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 196 | 56.88 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 211 | 56.98 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 222 | 57.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 242 | 57.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 246 | 57.05 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 256 | 57.17 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 258 | 57.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 263 | 57.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 277 | 57.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 279 | 57.32 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 282 | 57.37 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 283 | 57.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 285 | 57.39 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 297 | 57.45 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 298 | 57.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 309 | 57.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 337 | 57.70 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 5 |
| 338 | 57.70 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 348 | 57.73 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 12 |
| 349 | 57.73 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 350 | 57.73 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 354 | 57.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 11 |
| 369 | 57.80 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 393 | 57.84 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 397 | 57.86 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 402 | 57.89 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 403 | 57.89 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 404 | 57.89 | radiation | 30.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 407 | 57.89 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 15 |
| 409 | 57.89 | temperature | 10.0 | 720 | > th | dose independent | rect. | 21 | 20 |
| 412 | 57.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 417 | 57.92 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 4 |
| 433 | 57.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 434 | 57.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 438 | 57.97 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 439 | 57.97 | humidity | 50.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 441 | 57.97 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 442 | 57.97 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 4 |
| 443 | 57.97 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 445 | 57.97 | temperature | 10.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 448 | 57.98 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 483 | 58.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 501 | 58.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 554 | 58.16 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 4 |
| 557 | 58.16 | wind | 9.0 | 720 | < th | dose independent | rect. | 9 | 20 |
| 559 | 58.16 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 625 | 58.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 645 | 58.29 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 646 | 58.30 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 660 | 58.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 676 | 58.36 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 13 |
| 682 | 58.37 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 695 | 58.40 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 20 |
| 705 | 58.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 12 |
| 710 | 58.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 726 | 58.47 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 18 | 10 |
| 727 | 58.47 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 729 | 58.47 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 730 | 58.47 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 18 | 12 |
| 770 | 58.49 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 771 | 58.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 2 | 10 |
| 775 | 58.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 781 | 58.51 | temperature | 20.0 | 90 | > th | dose independent | rect. | 22 | 12 |
| 801 | 58.55 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 825 | 58.57 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 12 |
| 827 | 58.57 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 845 | 58.60 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 870 | 58.62 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 883 | 58.64 | wind | 9.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 910 | 58.70 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 915 | 58.71 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 937 | 58.76 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 941 | 58.76 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 969 | 58.78 | temperature | 10.0 | 720 | > th | dose independent | rect. | 2 | 10 |
| 970 | 58.78 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 2 | 10 |
| 971 | 58.78 | temperature | 10.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 980 | 58.78 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 5 |
| 981 | 58.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 986 | 58.79 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 993 | 58.80 | wind | 3.0 | 30 | < th | dose dependent | rect. | 3 | 18 |