Os04g0223500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAD dependent oxidoreductase family protein.
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Os04g0223500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAD dependent oxidoreductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 579.67 | 1.13 | 6.31 | -4.65 | 6.1 | 2.17 | -3.1 | 5.32 | -0.629 | 17.4 | 20.12 | 4070 | -- | -- |
| 608.97 | 1.15 | 6.33 | -4.74 | 6.05 | 2.4 | -3.17 | -- | -0.65 | 17.4 | 21.58 | 4019 | -- | -- |
| 603.48 | 1.14 | 6.31 | -4.65 | 6.08 | 2.2 | -- | 5.26 | -0.645 | 17.5 | 20.09 | 4072 | -- | -- |
| 628.46 | 1.17 | 6.32 | -4.89 | 6.01 | 2.37 | -- | -- | -0.721 | 17.4 | 21.57 | 4018 | -- | -- |
| 1087.5 | 1.54 | 6.41 | -3.42 | -- | 8.3 | -- | 0.168 | -1.1 | -- | 1.822 | 2122 | -- | -- |
| 739.42 | 1.27 | 6.29 | -5.03 | 6.12 | -- | -3.12 | -- | -0.473 | 17.6 | -- | -- | -- | -- |
| 763.29 | 1.29 | 6.3 | -5.02 | 6.1 | -- | -- | -- | -0.487 | 17.7 | -- | -- | -- | -- |
| 947.93 | 1.43 | 6.37 | -5.62 | -- | 9.11 | -- | -- | -1.23 | -- | 1.561 | 2131 | -- | -- |
| 1233.54 | 1.64 | 6.42 | -- | 6.13 | 2.86 | -- | -- | -0.541 | 17.4 | 38 | 4162 | -- | -- |
| 2694.05 | 2.43 | 6.21 | -5.22 | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
| 1427.51 | 1.77 | 6.18 | -- | 6.18 | -- | -- | -- | 0.0726 | 17.6 | -- | -- | -- | -- |
| 1726.88 | 1.94 | 6.28 | -- | -- | 8.8 | -- | -- | -0.932 | -- | 5.02 | 2116 | -- | -- |
| 3411.48 | 2.73 | 6.08 | -- | -- | -- | -- | -- | -0.054 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 574.82 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 16 |
| 3 | 578.66 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 16 |
| 5 | 582.39 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 7 | 584.42 | radiation | 30 | 4320 | < th | dose dependent | rect. | 8 | 4 |
| 9 | 585.03 | radiation | 20 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 12 | 586.35 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 19 | 587.41 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 38 | 588.23 | radiation | 20 | 4320 | < th | dose dependent | rect. | 7 | 6 |
| 59 | 589.21 | radiation | 1 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 63 | 589.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 72 | 590.25 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 85 | 591.34 | radiation | 20 | 4320 | > th | dose independent | sin | 4 | NA |
| 89 | 591.56 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 5 |
| 107 | 591.94 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 114 | 592.10 | radiation | 10 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 122 | 592.52 | radiation | 20 | 4320 | < th | dose dependent | rect. | 21 | 17 |
| 123 | 592.53 | radiation | 20 | 4320 | < th | dose dependent | rect. | 19 | 19 |
| 143 | 592.63 | radiation | 20 | 4320 | < th | dose dependent | rect. | 1 | 13 |
| 156 | 592.90 | radiation | 20 | 4320 | < th | dose dependent | sin | 4 | NA |
| 180 | 593.56 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 206 | 593.89 | radiation | 20 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 210 | 593.92 | radiation | 20 | 4320 | > th | dose independent | no | NA | NA |
| 470 | 594.89 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 471 | 594.89 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 501 | 594.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 12 |
| 515 | 595.13 | radiation | 40 | 4320 | < th | dose dependent | rect. | 14 | 22 |
| 582 | 595.67 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 652 | 596.16 | radiation | 1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 686 | 596.39 | radiation | 10 | 4320 | > th | dose dependent | rect. | 8 | 8 |
| 692 | 596.46 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 801 | 597.02 | radiation | 20 | 4320 | < th | dose independent | sin | 3 | NA |
| 839 | 597.37 | radiation | 30 | 4320 | < th | dose dependent | rect. | 7 | 19 |
| 862 | 597.45 | radiation | 30 | 4320 | < th | dose dependent | rect. | 7 | 13 |
| 923 | 597.68 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 9 |