Os04g0223000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec1-like protein family protein.
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Os04g0223000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sec1-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.04 | 0.216 | 8.64 | 1.02 | 0.632 | 0.611 | 0.152 | -0.522 | 0.345 | 2.37 | 23.7 | 715 | -- | -- |
| 22.02 | 0.219 | 8.65 | 0.866 | 0.686 | 0.607 | 0.224 | -- | 0.286 | 2.5 | 23.7 | 720 | -- | -- |
| 21.09 | 0.214 | 8.64 | 1.02 | 0.622 | 0.608 | -- | -0.549 | 0.345 | 2.38 | 23.65 | 682 | -- | -- |
| 21.81 | 0.217 | 8.66 | 0.816 | 0.628 | 0.588 | -- | -- | 0.268 | 2.44 | 23.3 | 705 | -- | -- |
| 37.67 | 0.286 | 8.65 | 0.967 | -- | 0.569 | -- | -0.323 | 0.318 | -- | 23.61 | 238 | -- | -- |
| 39.32 | 0.294 | 8.72 | 0.592 | 0.592 | -- | 0.0868 | -- | 0.015 | 3.15 | -- | -- | -- | -- |
| 39.35 | 0.294 | 8.72 | 0.591 | 0.593 | -- | -- | -- | 0.0145 | 3.17 | -- | -- | -- | -- |
| 35.33 | 0.277 | 8.65 | 0.762 | -- | 0.559 | -- | -- | 0.288 | -- | 24.31 | 180 | -- | -- |
| 38.29 | 0.288 | 8.69 | -- | 0.629 | 0.48 | -- | -- | 0.181 | 2.58 | 23.2 | 716 | -- | -- |
| 59.32 | 0.36 | 8.72 | 0.616 | -- | -- | -- | -- | 0.03 | -- | -- | -- | -- | -- |
| 48.54 | 0.326 | 8.73 | -- | 0.604 | -- | -- | -- | -0.0513 | 3.17 | -- | -- | -- | -- |
| 48.51 | 0.324 | 8.72 | -- | -- | 0.479 | -- | -- | 0.0278 | -- | 26.9 | 31 | -- | -- |
| 69.32 | 0.389 | 8.73 | -- | -- | -- | -- | -- | -0.0383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 6 | 21.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 10 | 21.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 14 | 21.47 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 19 | 21.50 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 20 | 21.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 26 | 21.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 30 | 21.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 37 | 21.62 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 45 | 21.68 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 50 | 21.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 53 | 21.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 57 | 21.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 72 | 21.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 85 | 21.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 89 | 21.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 95 | 21.94 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 106 | 22.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 111 | 22.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 141 | 22.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 145 | 22.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 207 | 22.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 254 | 22.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 283 | 22.54 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 286 | 22.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 292 | 22.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 297 | 22.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 327 | 22.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 367 | 22.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 406 | 22.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 492 | 22.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 495 | 22.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 503 | 22.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 611 | 23.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 685 | 23.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 691 | 23.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 741 | 23.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 792 | 23.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |