Os04g0221300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os04g0221300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.39 | 0.343 | 8.28 | -0.635 | 0.339 | 0.541 | 0.165 | -0.253 | 0.253 | 14.3 | 21.4 | 929 | -- | -- |
| 53.57 | 0.341 | 8.28 | -0.592 | 0.335 | 0.557 | 0.165 | -- | 0.266 | 14.2 | 21.49 | 924 | -- | -- |
| 53.48 | 0.341 | 8.28 | -0.641 | 0.34 | 0.54 | -- | -0.296 | 0.253 | 14.2 | 21.4 | 924 | -- | -- |
| 53.72 | 0.341 | 8.28 | -0.567 | 0.336 | 0.558 | -- | -- | 0.263 | 14.2 | 21.44 | 924 | -- | -- |
| 60.04 | 0.361 | 8.28 | -0.614 | -- | 0.45 | -- | -0.306 | 0.259 | -- | 21.75 | 781 | -- | -- |
| 63.85 | 0.375 | 8.24 | -0.358 | 0.286 | -- | 0.325 | -- | 0.425 | 15.2 | -- | -- | -- | -- |
| 64.19 | 0.375 | 8.24 | -0.351 | 0.287 | -- | -- | -- | 0.427 | 15.2 | -- | -- | -- | -- |
| 59.73 | 0.36 | 8.27 | -0.492 | -- | 0.405 | -- | -- | 0.296 | -- | 21.9 | 264 | -- | -- |
| 60.81 | 0.363 | 8.26 | -- | 0.301 | 0.412 | -- | -- | 0.345 | 13.8 | 22.01 | 766 | -- | -- |
| 68.9 | 0.388 | 8.24 | -0.363 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 67.44 | 0.384 | 8.23 | -- | 0.294 | -- | -- | -- | 0.466 | 15.2 | -- | -- | -- | -- |
| 65.8 | 0.378 | 8.26 | -- | -- | 0.347 | -- | -- | 0.359 | -- | 22.1 | 311 | -- | -- |
| 72.38 | 0.397 | 8.23 | -- | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.64 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 1 |
| 3 | 41.64 | humidity | 80 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 6 | 42.05 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 4 |
| 11 | 42.08 | humidity | 80 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 16 | 42.45 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 2 |
| 21 | 42.45 | humidity | 80 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 25 | 42.46 | humidity | 80 | 90 | < th | dose dependent | rect. | 22 | 2 |
| 26 | 42.49 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 2 |
| 69 | 53.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 92 | 53.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 107 | 54.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 127 | 54.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 216 | 54.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 225 | 54.77 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 246 | 54.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 259 | 54.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 266 | 54.88 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 294 | 54.93 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 331 | 54.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 332 | 55.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 342 | 55.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 376 | 55.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 386 | 55.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 408 | 55.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 413 | 55.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 430 | 55.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 435 | 55.18 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 436 | 55.18 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 465 | 55.23 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 545 | 55.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 549 | 55.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 556 | 55.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 597 | 55.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 655 | 55.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 663 | 55.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 691 | 55.50 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 851 | 55.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 873 | 55.68 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 906 | 55.72 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 955 | 55.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 990 | 55.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 997 | 55.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |