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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0219800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.0355) R2 : 0.646
β1 : 1.03 (0.128) R2dD : 0.0538 R2D : 0.0186
β2 : 1.18 (0.107) R2dC : 0.14 R2C : 0.308
β3 : 1.55 (0.131) R2dE : 0.179 R2E : 0.394
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.622 (0.0775) R2dN8 : 0.0702 R2N8 : 0.0797
σ : 0.65
deviance : 194.88
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_____
C
peak time of C : 8.88
E
wheather : temperature
threshold : 20.7
memory length : 647
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 0.297

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.57 0.655 3.92 0.883 1.16 1.48 1.11 -0.966 0.546 8.8 20.74 620 4.95 1
193.54 0.648 3.91 0.99 1.16 1.57 1.05 -- 0.578 8.82 20.95 636 5.02 0.6
194.96 0.65 3.89 0.971 1.2 1.54 -- -0.24 0.625 8.89 20.69 647 5.03 0.315
194.88 0.65 3.9 1.03 1.18 1.55 -- -- 0.622 8.88 20.7 647 5.03 0.297
228.01 0.703 3.97 0.921 -- 2.07 -- -0.354 0.577 -- 15.99 599 4.95 0.5
250.83 0.742 3.82 1.2 1.9 -- 1.11 -- 0.88 9.28 -- -- -- --
255.27 0.748 3.82 1.24 1.9 -- -- -- 0.881 9.29 -- -- -- --
222.79 0.695 3.92 1.05 -- 1.92 -- -- 0.662 -- 13.17 655 5.08 0.0143
222.61 0.695 3.94 -- 1.12 1.73 -- -- 0.511 8.62 20.76 651 5.09 0.109
465.26 1.01 3.87 1.23 -- -- -- -- 0.889 -- -- -- -- --
295.51 0.804 3.85 -- 1.9 -- -- -- 0.744 9.24 -- -- -- --
248.92 0.735 3.96 -- -- 2.03 -- -- 0.5 -- 14.53 641 5.02 0.048
504.99 1.05 3.9 -- -- -- -- -- 0.753 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.63 temperature 20 720 > th dose dependent rect. 5 1
2 201.21 temperature 20 720 > th dose dependent rect. 4 3
6 204.85 temperature 10 720 > th dose dependent rect. 3 4
27 213.92 radiation 1 720 > th dose independent rect. 18 12
34 214.86 temperature 25 270 < th dose independent rect. 7 7
37 215.19 temperature 20 720 > th dose independent rect. 4 2
41 215.62 temperature 25 10 > th dose independent rect. 5 11
60 217.12 radiation 1 720 < th dose dependent rect. 22 9
64 217.39 temperature 10 10 > th dose dependent rect. 5 19
78 218.47 radiation 1 30 < th dose independent sin 7 NA
80 218.55 radiation 1 30 > th dose independent sin 7 NA
94 219.01 radiation 1 30 < th dose independent rect. 24 14
98 219.13 temperature 20 10 > th dose dependent rect. 5 10
101 219.21 radiation 1 30 < th dose independent rect. 24 12
104 219.28 radiation 10 10 < th dose dependent sin 9 NA
107 219.40 radiation 1 30 < th dose independent rect. 24 8
111 219.45 temperature 25 10 < th dose independent rect. 1 14
117 219.59 temperature 30 720 < th dose dependent rect. 24 10
130 219.94 radiation 1 720 > th dose independent rect. 5 1
163 220.61 temperature 25 10 > th dose independent rect. 5 8
172 220.82 atmosphere 995 10 > th dose dependent rect. 24 5
177 220.94 temperature 25 720 < th dose dependent rect. 2 8
200 221.37 temperature 25 720 < th dose dependent rect. 5 5
224 221.73 radiation 1 30 > th dose independent rect. 5 4
240 221.77 radiation 1 30 < th dose dependent rect. 24 14
243 221.79 temperature 25 10 > th dose independent rect. 5 17
256 221.98 temperature 20 10 > th dose dependent rect. 5 4
257 221.98 radiation 1 30 < th dose dependent rect. 24 12
269 222.06 radiation 1 720 < th dose dependent rect. 5 2
281 222.17 radiation 1 30 < th dose dependent rect. 24 8
286 222.19 temperature 30 10 < th dose dependent rect. 24 14
287 222.20 radiation 1 30 < th dose dependent sin 5 NA
299 222.28 temperature 15 10 > th dose dependent rect. 5 17
301 222.29 radiation 40 30 < th dose independent rect. 5 19
319 222.49 atmosphere 1000 10 > th dose independent rect. 24 5
323 222.51 temperature 10 270 > th dose dependent rect. 3 12
332 222.61 radiation 1 1440 < th dose dependent rect. 17 14
333 222.63 radiation 1 1440 < th dose dependent rect. 8 23
339 222.66 temperature 30 720 < th dose dependent rect. 24 5
342 222.70 temperature 30 720 < th dose dependent rect. 2 1
357 222.82 temperature 25 270 < th dose dependent rect. 7 7
359 222.82 radiation 1 1440 < th dose dependent rect. 17 23
364 222.89 temperature 25 720 < th dose dependent rect. 7 2
380 222.94 radiation 1 1440 < th dose dependent rect. 17 18
388 222.98 radiation 1 1440 < th dose dependent rect. 15 16
389 222.98 radiation 1 1440 < th dose dependent rect. 13 18
402 223.05 temperature 25 10 > th dose independent rect. 5 6
411 223.08 radiation 1 1440 < th dose dependent sin 12 NA
426 223.21 temperature 25 10 < th dose independent sin 2 NA
445 223.34 radiation 1 1440 < th dose dependent rect. 1 19
456 223.39 radiation 1 1440 < th dose dependent rect. 1 23
472 223.45 radiation 1 1440 < th dose dependent rect. 15 20
474 223.45 radiation 1 1440 < th dose dependent rect. 23 21
488 223.47 radiation 1 1440 < th dose dependent rect. 5 15
511 223.51 radiation 1 1440 < th dose dependent rect. 5 23
516 223.52 radiation 1 1440 < th dose dependent no NA NA
524 223.53 temperature 25 10 > th dose independent sin 2 NA
589 223.81 temperature 20 10 > th dose dependent rect. 5 6
660 224.32 temperature 25 10 > th dose dependent sin 6 NA
665 224.34 temperature 25 270 > th dose independent rect. 5 6
691 224.54 atmosphere 1005 270 > th dose dependent rect. 24 2
731 224.70 radiation 1 1440 < th dose dependent sin 0 NA
749 224.84 temperature 15 10 > th dose dependent rect. 24 5
754 224.86 radiation 1 720 > th dose dependent rect. 18 12
770 225.02 radiation 1 1440 < th dose dependent rect. 17 3
787 225.11 radiation 1 1440 < th dose dependent rect. 17 7
806 225.23 atmosphere 1005 10 > th dose dependent rect. 2 3
807 225.23 temperature 20 10 > th dose dependent rect. 5 8
808 225.24 temperature 25 10 > th dose independent rect. 5 4
815 225.31 radiation 1 30 < th dose independent rect. 24 19
819 225.33 radiation 1 720 > th dose independent rect. 18 21
834 225.38 radiation 1 30 < th dose dependent rect. 24 19
863 225.50 radiation 1 720 > th dose dependent rect. 4 2
881 225.58 temperature 25 720 < th dose dependent sin 5 NA
903 225.64 temperature 20 720 > th dose dependent sin 7 NA
944 225.80 temperature 20 10 > th dose independent rect. 24 5