Os04g0219600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
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Os04g0219600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.8 | 0.435 | 7.73 | 0.166 | 0.253 | -1.7 | -0.625 | 0.963 | 0.879 | 4.58 | 19 | 220 | -- | -- |
| 86.22 | 0.432 | 7.75 | 0.00624 | 0.263 | -1.72 | -0.876 | -- | 0.833 | 4.32 | 18.01 | 231 | -- | -- |
| 86.36 | 0.433 | 7.71 | 0.265 | 0.272 | -1.71 | -- | 1.51 | 0.912 | 5.58 | 19 | 192 | -- | -- |
| 88.18 | 0.437 | 7.74 | 0.00738 | 0.276 | -1.7 | -- | -- | 0.832 | 5.34 | 18 | 203 | -- | -- |
| 88.92 | 0.439 | 7.7 | 0.34 | -- | -1.93 | -- | 1.62 | 0.953 | -- | 19.14 | 214 | -- | -- |
| 128.95 | 0.532 | 7.8 | -0.4 | 0.861 | -- | -0.47 | -- | 0.548 | 4.47 | -- | -- | -- | -- |
| 129.54 | 0.533 | 7.8 | -0.396 | 0.858 | -- | -- | -- | 0.55 | 4.51 | -- | -- | -- | -- |
| 90.92 | 0.444 | 7.74 | 0.0696 | -- | -1.93 | -- | -- | 0.874 | -- | 18 | 226 | -- | -- |
| 88.18 | 0.437 | 7.74 | -- | 0.277 | -1.7 | -- | -- | 0.83 | 5.35 | 18 | 202 | -- | -- |
| 168.89 | 0.607 | 7.81 | -0.363 | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
| 133.67 | 0.541 | 7.79 | -- | 0.851 | -- | -- | -- | 0.594 | 4.53 | -- | -- | -- | -- |
| 91.04 | 0.444 | 7.74 | -- | -- | -1.9 | -- | -- | 0.864 | -- | 18.1 | 225 | -- | -- |
| 172.36 | 0.613 | 7.8 | -- | -- | -- | -- | -- | 0.613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 4 | 85.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 5 | 85.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 13 | 86.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 17 | 86.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 31 | 86.90 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 37 | 87.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 71 | 87.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 80 | 87.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 113 | 88.34 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 191 | 89.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 201 | 89.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 239 | 89.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 303 | 90.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 345 | 90.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 367 | 90.80 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 420 | 91.07 | temperature | 20 | 1440 | > th | dose dependent | sin | 1 | NA |
| 439 | 91.13 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 546 | 91.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 548 | 91.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 629 | 91.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 801 | 92.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 874 | 92.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |