Os04g0218100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0218100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.06 | 0.221 | 9.39 | 1.02 | 0.377 | -0.228 | -0.377 | 3.74 | 0.128 | 8.88 | 26.24 | 1433 | -- | -- |
| 24.85 | 0.232 | 9.5 | 0.00692 | 0.398 | 0.278 | -0.436 | -- | -0.043 | 8.68 | 29.82 | 4036 | -- | -- |
| 22.5 | 0.221 | 9.39 | 0.977 | 0.377 | -0.237 | -- | 3.85 | 0.109 | 8.92 | 26.66 | 1380 | -- | -- |
| 25.36 | 0.235 | 9.5 | -0.00912 | 0.395 | 0.278 | -- | -- | -0.0372 | 8.85 | 30.02 | 4064 | -- | -- |
| 29.81 | 0.254 | 9.38 | 1.12 | -- | -0.379 | -- | 4.77 | 0.17 | -- | 25.47 | 2023 | -- | -- |
| 27.41 | 0.245 | 9.51 | 0.0712 | 0.384 | -- | -0.423 | -- | -0.0845 | 8.63 | -- | -- | -- | -- |
| 27.99 | 0.248 | 9.51 | 0.0575 | 0.386 | -- | -- | -- | -0.0846 | 8.62 | -- | -- | -- | -- |
| 34.11 | 0.272 | 9.51 | -0.00287 | -- | 0.254 | -- | -- | -0.0374 | -- | 29.97 | 4336 | -- | -- |
| 25.36 | 0.235 | 9.5 | -- | 0.395 | 0.276 | -- | -- | -0.0365 | 8.85 | 30 | 4067 | -- | -- |
| 36.36 | 0.282 | 9.52 | 0.0586 | -- | -- | -- | -- | -0.0812 | -- | -- | -- | -- | -- |
| 28.08 | 0.248 | 9.51 | -- | 0.386 | -- | -- | -- | -0.091 | 8.6 | -- | -- | -- | -- |
| 34.11 | 0.272 | 9.51 | -- | -- | 0.25 | -- | -- | -0.037 | -- | 30.1 | 4349 | -- | -- |
| 36.45 | 0.282 | 9.52 | -- | -- | -- | -- | -- | -0.0877 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.05 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 4 | 22.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 13 | 22.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 22 | 22.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 32 | 22.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 47 | 22.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 115 | 22.33 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 119 | 22.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 131 | 22.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 142 | 22.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 146 | 22.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 148 | 22.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 170 | 22.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 282 | 22.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 304 | 22.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 335 | 22.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 336 | 22.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 380 | 22.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 398 | 22.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 417 | 22.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 464 | 22.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 521 | 22.69 | temperature | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 588 | 22.72 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 599 | 22.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 620 | 22.73 | temperature | 30 | 1440 | > th | dose independent | sin | 3 | NA |
| 947 | 22.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 17 |