Os04g0217600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os04g0217600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.54 | 0.369 | 7.45 | -1.03 | 0.646 | -1.52 | 0.445 | -0.434 | 0.289 | 5.98 | 24.4 | 36 | -- | -- |
| 61.86 | 0.366 | 7.45 | -1.07 | 0.65 | -1.46 | 0.386 | -- | 0.289 | 6.07 | 24.4 | 40 | -- | -- |
| 61.95 | 0.367 | 7.45 | -1.02 | 0.645 | -1.5 | -- | -0.379 | 0.298 | 6.16 | 24.29 | 40 | -- | -- |
| 62.18 | 0.367 | 7.46 | -1.08 | 0.645 | -1.47 | -- | -- | 0.281 | 6.17 | 24.36 | 40 | -- | -- |
| 82.41 | 0.425 | 7.46 | -0.992 | -- | -1.45 | -- | -0.32 | 0.337 | -- | 23.81 | 35 | -- | -- |
| 92.79 | 0.452 | 7.4 | -0.738 | 0.623 | -- | 0.1 | -- | 0.535 | 7.64 | -- | -- | -- | -- |
| 92.82 | 0.451 | 7.4 | -0.736 | 0.622 | -- | -- | -- | 0.535 | 7.67 | -- | -- | -- | -- |
| 82.56 | 0.425 | 7.46 | -1.03 | -- | -1.41 | -- | -- | 0.327 | -- | 23.9 | 33 | -- | -- |
| 89.88 | 0.444 | 7.42 | -- | 0.608 | -1.04 | -- | -- | 0.462 | 6.61 | 24.4 | 36 | -- | -- |
| 113.67 | 0.498 | 7.41 | -0.727 | -- | -- | -- | -- | 0.544 | -- | -- | -- | -- | -- |
| 107.09 | 0.484 | 7.38 | -- | 0.617 | -- | -- | -- | 0.617 | 7.75 | -- | -- | -- | -- |
| 108.61 | 0.487 | 7.42 | -- | -- | -1.09 | -- | -- | 0.494 | -- | 23.53 | 2 | -- | -- |
| 127.63 | 0.527 | 7.39 | -- | -- | -- | -- | -- | 0.625 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 23 |
| 2 | 61.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 61.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 8 | 61.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 10 | 61.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 11 | 61.76 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 12 | 61.77 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 14 | 61.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 15 | 61.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 61.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 17 | 61.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 32 | 61.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 35 | 62.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 94 | 63.49 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 117 | 63.75 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 152 | 64.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 178 | 64.45 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 181 | 64.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 192 | 64.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 196 | 64.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 207 | 64.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 213 | 64.91 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 216 | 64.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 224 | 65.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 241 | 65.18 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 244 | 65.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 247 | 65.23 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 265 | 65.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 271 | 65.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 276 | 65.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 285 | 65.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 319 | 65.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 345 | 65.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 351 | 65.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 352 | 65.52 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 369 | 65.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 385 | 65.58 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 400 | 65.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 409 | 65.63 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 468 | 65.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 507 | 65.81 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 518 | 65.83 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 537 | 65.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 569 | 65.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 598 | 65.99 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 6 |
| 615 | 66.03 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 702 | 66.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 719 | 66.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 724 | 66.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 727 | 66.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 740 | 66.31 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 745 | 66.32 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 826 | 66.46 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |