Os04g0212400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0212400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.98 | 0.542 | 6.11 | 0.849 | 0.881 | -0.88 | -0.0625 | -0.35 | 0.198 | 14.8 | 20.2 | 269 | -- | -- |
| 133.37 | 0.538 | 6.12 | 0.801 | 0.889 | -0.831 | -0.00902 | -- | 0.193 | 14.8 | 20.2 | 261 | -- | -- |
| 132.99 | 0.537 | 6.11 | 0.845 | 0.882 | -0.878 | -- | -0.334 | 0.197 | 14.8 | 20.22 | 270 | -- | -- |
| 133.33 | 0.538 | 6.12 | 0.796 | 0.889 | -0.832 | -- | -- | 0.185 | 14.8 | 20.39 | 270 | -- | -- |
| 174.97 | 0.616 | 6.09 | 0.801 | -- | -1.07 | -- | -0.392 | 0.182 | -- | 20.3 | 214 | -- | -- |
| 155.89 | 0.585 | 6.08 | 1.05 | 1.02 | -- | 0.063 | -- | 0.345 | 14.9 | -- | -- | -- | -- |
| 155.91 | 0.585 | 6.08 | 1.05 | 1.02 | -- | -- | -- | 0.345 | 14.9 | -- | -- | -- | -- |
| 175.19 | 0.616 | 6.11 | 0.697 | -- | -1.05 | -- | -- | 0.15 | -- | 20.3 | 194 | -- | -- |
| 147.71 | 0.566 | 6.14 | -- | 0.863 | -1.14 | -- | -- | 0.0794 | 14.7 | 19.75 | 299 | -- | -- |
| 215.43 | 0.686 | 6.08 | 1.01 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 185.18 | 0.637 | 6.11 | -- | 0.996 | -- | -- | -- | 0.228 | 14.9 | -- | -- | -- | -- |
| 186.92 | 0.637 | 6.15 | -- | -- | -1.24 | -- | -- | 0.0311 | -- | 20.17 | 214 | -- | -- |
| 242.37 | 0.727 | 6.11 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 9 | 128.95 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 12 | 129.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 13 | 129.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 15 | 129.16 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 23 | 129.57 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 26 | 129.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 34 | 129.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 38 | 130.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 48 | 130.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 15 |
| 51 | 130.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 55 | 130.45 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 71 | 130.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 72 | 130.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 81 | 130.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 85 | 130.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 115 | 131.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 119 | 131.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 133 | 131.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 134 | 131.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 147 | 131.41 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 151 | 131.44 | wind | 3.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 152 | 131.46 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 155 | 131.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 158 | 131.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 166 | 131.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 172 | 131.65 | wind | 3.0 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 205 | 131.86 | temperature | 20.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 207 | 131.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 228 | 131.98 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 287 | 132.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 312 | 132.39 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 336 | 132.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 385 | 132.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 404 | 132.69 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 414 | 132.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 424 | 132.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 429 | 132.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 450 | 132.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 459 | 132.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 513 | 133.02 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 534 | 133.08 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 561 | 133.12 | wind | 7.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 573 | 133.14 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 581 | 133.16 | wind | 7.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 594 | 133.19 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 597 | 133.21 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 603 | 133.22 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 604 | 133.23 | wind | 7.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 642 | 133.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 656 | 133.34 | wind | 7.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 671 | 133.38 | wind | 7.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 707 | 133.45 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 726 | 133.48 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 23 |
| 738 | 133.52 | wind | 3.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 767 | 133.58 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 796 | 133.64 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 811 | 133.68 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 821 | 133.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 846 | 133.76 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 856 | 133.78 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 859 | 133.79 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 880 | 133.85 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 915 | 133.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 17 |
| 925 | 133.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 978 | 134.11 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 985 | 134.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 16 |