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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0212200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CheY-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0549) R2 : 0.0742
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.04 (1.01) R2dE : 0.0506 R2E : 0.0465
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.375 (0.116) R2dN8 : 0.0277 R2N8 : 0.0236
σ : 1.03
deviance : 490.03
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.3902
memory length : 36
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 1.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
452.98 1 3.22 0.213 0.132 4.36 2.14 -6.56 -0.264 16.3 1.073 651 20 1.83
475.19 1.02 3.17 0.612 0.0542 4.81 -1.25 -- -0.315 4.17 0.4996 44 21.2 1.59
464.64 1 3.21 0.284 0.113 4.19 -- -6.57 -0.254 16.2 1.212 640 20.1 1.86
479.39 1.02 3.17 0.625 0.0726 4.78 -- -- -0.308 0.502 0.4077 44 21.2 1.6
464.53 1 3.21 0.263 -- 4.32 -- -7.65 -0.236 -- 1.301 640 20.1 1.77
499.02 1.05 3.17 0.695 0.0221 -- -1.38 -- -0.324 5 -- -- -- --
503.02 1.05 3.17 0.695 0.12 -- -- -- -0.318 23.2 -- -- -- --
479.72 1.02 3.16 0.627 -- 4.81 -- -- -0.307 -- 0.3833 41 21.2 1.67
489.63 1.03 3.18 -- 0.0804 5.01 -- -- -0.377 0.959 0.3662 42 21.3 1.55
503.91 1.05 3.17 0.698 -- -- -- -- -0.317 -- -- -- -- --
515.76 1.06 3.19 -- 0.127 -- -- -- -0.395 23.6 -- -- -- --
490.03 1.03 3.18 -- -- 5.04 -- -- -0.375 -- 0.3902 36 21.4 1.62
516.77 1.06 3.18 -- -- -- -- -- -0.394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 457.23 wind 1.0 720 < th dose dependent rect. 20 2
3 457.87 wind 1.0 720 < th dose independent rect. 20 2
8 461.07 temperature 20.0 90 < th dose dependent rect. 2 1
15 466.05 temperature 20.0 90 < th dose independent rect. 2 1
39 469.78 temperature 20.0 270 < th dose dependent rect. 24 4
78 472.58 wind 3.0 90 > th dose dependent rect. 4 1
94 473.57 radiation 1.0 30 < th dose dependent rect. 17 15
106 473.76 wind 1.0 90 < th dose independent rect. 4 1
107 473.76 wind 1.0 1440 > th dose independent rect. 20 2
115 474.35 wind 5.0 30 > th dose independent rect. 17 2
127 474.62 wind 3.0 30 > th dose dependent rect. 17 2
154 475.20 atmosphere 1000.0 10 < th dose independent rect. 4 3
157 475.22 atmosphere 1000.0 10 < th dose dependent rect. 4 2
160 475.23 atmosphere 1000.0 90 < th dose independent rect. 4 1
164 475.24 atmosphere 1000.0 90 < th dose dependent rect. 4 1
192 475.70 wind 1.0 1440 < th dose dependent rect. 4 1
195 475.86 atmosphere 1000.0 10 < th dose independent rect. 23 8
197 475.88 wind 1.0 90 < th dose dependent rect. 4 1
199 476.00 wind 3.0 90 > th dose independent rect. 4 1
206 476.12 radiation 1.0 30 < th dose dependent rect. 19 23
212 476.21 radiation 1.0 90 > th dose dependent rect. 17 13
238 476.59 atmosphere 1000.0 10 < th dose independent rect. 23 11
243 476.68 radiation 1.0 30 < th dose dependent sin 12 NA
244 476.69 atmosphere 1000.0 720 < th dose independent rect. 23 1
251 476.76 wind 1.0 30 < th dose dependent rect. 17 5
253 476.77 wind 1.0 270 < th dose independent rect. 2 5
255 476.79 temperature 25.0 10 < th dose independent rect. 6 1
269 476.93 radiation 1.0 30 < th dose dependent no NA NA
270 476.93 wind 1.0 30 < th dose dependent rect. 21 2
288 476.98 radiation 1.0 30 < th dose dependent rect. 7 23
309 477.53 wind 1.0 10 < th dose dependent rect. 12 10
314 477.59 radiation 1.0 90 > th dose independent rect. 17 13
321 477.65 wind 1.0 10 < th dose independent rect. 21 1
325 477.65 radiation 1.0 10 < th dose independent rect. 17 15
340 477.82 radiation 1.0 10 > th dose independent rect. 17 13
344 477.85 atmosphere 1000.0 10 > th dose independent rect. 23 16
345 477.86 radiation 1.0 30 < th dose dependent rect. 3 23
346 477.88 wind 1.0 270 < th dose dependent rect. 2 4
374 478.13 radiation 1.0 30 < th dose dependent rect. 21 23
422 478.40 radiation 1.0 10 < th dose independent sin 10 NA
451 478.59 atmosphere 1000.0 10 < th dose dependent rect. 24 7
470 478.75 atmosphere 1000.0 270 > th dose independent rect. 20 17
476 478.86 atmosphere 1000.0 90 < th dose independent rect. 22 16
482 478.91 radiation 1.0 30 < th dose dependent rect. 1 23
488 478.94 atmosphere 1000.0 90 < th dose dependent rect. 24 6
501 478.98 wind 1.0 90 < th dose dependent rect. 4 18
525 479.14 wind 1.0 1440 < th dose independent rect. 4 1
564 479.34 radiation 1.0 10 > th dose independent sin 11 NA
581 479.42 radiation 1.0 30 < th dose dependent rect. 23 23
622 479.72 wind 1.0 1440 > th dose independent rect. 4 1
629 479.74 precipitation 0.1 270 > th dose independent rect. 1 1
630 479.74 precipitation 0.1 270 > th dose dependent rect. 1 1
657 479.94 humidity 70.0 720 > th dose independent rect. 16 1
661 479.96 wind 9.0 720 < th dose dependent rect. 17 1
673 480.05 wind 7.0 90 < th dose independent rect. 6 23
674 480.09 wind 1.0 10 < th dose independent rect. 12 10
712 480.39 temperature 20.0 10 < th dose dependent rect. 5 7
731 480.44 humidity 60.0 14400 > th dose independent rect. 6 1
740 480.47 wind 1.0 10 > th dose independent rect. 3 1
761 480.58 humidity 70.0 1440 < th dose independent rect. 16 1
775 480.67 radiation 1.0 90 > th dose independent rect. 15 15
785 480.71 wind 1.0 90 < th dose dependent rect. 4 6
798 480.82 precipitation 0.1 4320 < th dose independent rect. 6 1
800 480.82 precipitation 0.1 4320 < th dose dependent rect. 6 1
830 481.02 radiation 1.0 10 < th dose independent rect. 19 13
845 481.12 humidity 50.0 30 > th dose dependent rect. 16 13
850 481.15 temperature 30.0 720 < th dose independent rect. 16 1
887 481.29 atmosphere 1000.0 90 > th dose independent sin 7 NA
895 481.32 atmosphere 1000.0 270 > th dose independent sin 9 NA
905 481.35 atmosphere 1000.0 90 < th dose independent sin 8 NA
922 481.42 atmosphere 1010.0 30 < th dose independent rect. 8 21
938 481.50 wind 7.0 720 < th dose independent rect. 16 2
971 481.66 atmosphere 1010.0 30 < th dose independent rect. 6 23
981 481.68 humidity 60.0 1440 > th dose independent rect. 12 2