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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0210700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0309) R2 : 0.00611
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.109 (0.0651) R2dN8 : 0.00789 R2N8 : 0.00611
σ : 0.582
deviance : 155.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.82 0.558 3.37 0.77 0.176 -0.782 0.238 0.607 0.125 19.9 9.606 5481 -- --
141.14 0.553 3.4 0.641 0.177 -0.823 0.232 -- 0.0902 20 9.459 5480 -- --
140.98 0.553 3.37 0.773 0.176 -0.781 -- 0.633 0.126 20.2 10.29 5482 -- --
141.29 0.554 3.4 0.632 0.176 -0.819 -- -- 0.0893 20.3 9.176 5478 -- --
142.59 0.556 3.37 0.767 -- -0.776 -- 0.626 0.128 -- 10.3 5630 -- --
152.2 0.578 3.44 0.251 0.174 -- 0.265 -- -0.0796 19.1 -- -- -- --
152.38 0.578 3.44 0.245 0.174 -- -- -- -0.0792 19.3 -- -- -- --
142.9 0.557 3.39 0.632 -- -0.813 -- -- 0.091 -- 8.883 5626 -- --
147.54 0.569 3.42 -- 0.307 -0.778 -- -- -0.0142 16.5 9.176 5478 -- --
153.99 0.58 3.43 0.242 -- -- -- -- -0.0821 -- -- -- -- --
153.97 0.58 3.44 -- 0.172 -- -- -- -0.107 19.4 -- -- -- --
149.78 0.57 3.42 -- -- -0.481 -- -- -0.0317 -- 8.148 2901 -- --
155.55 0.582 3.44 -- -- -- -- -- -0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.07 humidity 80.0 14400 > th dose dependent rect. 22 2
2 136.20 radiation 30.0 720 > th dose dependent rect. 15 17
3 136.21 humidity 60.0 14400 > th dose dependent rect. 22 2
6 136.28 atmosphere 1015.0 14400 < th dose independent rect. 15 5
8 136.40 atmosphere 1015.0 14400 > th dose dependent rect. 13 5
9 136.42 atmosphere 1015.0 14400 > th dose independent rect. 14 3
35 136.86 radiation 30.0 4320 < th dose independent rect. 7 1
39 136.91 radiation 40.0 4320 < th dose independent rect. 3 6
44 136.91 radiation 40.0 4320 < th dose independent rect. 18 15
50 136.99 radiation 40.0 4320 < th dose independent rect. 20 13
57 137.05 wind 5.0 43200 > th dose dependent rect. 6 3
84 137.18 wind 9.0 43200 < th dose independent rect. 20 15
92 137.22 wind 7.0 43200 < th dose independent rect. 6 3
94 137.24 wind 1.0 43200 < th dose dependent rect. 17 2
95 137.25 wind 7.0 43200 > th dose independent rect. 6 3
101 137.26 wind 9.0 43200 > th dose independent rect. 20 15
106 137.28 wind 9.0 43200 > th dose independent rect. 20 13
117 137.32 atmosphere 1015.0 14400 > th dose dependent rect. 19 2
124 137.37 wind 7.0 43200 > th dose dependent rect. 20 15
135 137.42 humidity 80.0 43200 > th dose independent rect. 17 3
148 137.48 humidity 80.0 43200 > th dose dependent rect. 7 1
160 137.52 wind 9.0 43200 > th dose dependent rect. 20 12
166 137.54 wind 9.0 43200 > th dose independent sin 9 NA
168 137.54 wind 9.0 43200 > th dose independent rect. 17 18
183 137.59 wind 9.0 43200 < th dose independent sin 9 NA
205 137.63 wind 9.0 43200 < th dose independent rect. 8 4
224 137.66 radiation 40.0 43200 < th dose dependent rect. 18 10
225 137.66 humidity 80.0 14400 > th dose dependent rect. 21 11
238 137.68 atmosphere 1015.0 43200 > th dose independent rect. 19 2
255 137.71 wind 9.0 43200 < th dose independent rect. 9 2
259 137.71 wind 7.0 43200 > th dose dependent rect. 23 13
266 137.73 humidity 80.0 43200 < th dose independent rect. 18 1
272 137.73 wind 7.0 43200 > th dose dependent rect. 2 10
275 137.74 wind 9.0 43200 > th dose dependent sin 11 NA
283 137.75 wind 9.0 43200 < th dose independent rect. 22 2
285 137.75 wind 9.0 43200 < th dose independent rect. 1 11
313 137.79 wind 9.0 43200 > th dose independent rect. 23 4
319 137.80 wind 9.0 43200 > th dose independent rect. 9 3
333 137.83 wind 7.0 43200 > th dose dependent sin 8 NA
352 137.85 radiation 40.0 43200 < th dose dependent rect. 18 2
377 137.88 wind 9.0 43200 > th dose independent rect. 1 11
419 137.92 wind 7.0 43200 > th dose dependent rect. 23 1
446 137.95 wind 9.0 43200 > th dose independent rect. 22 2
453 137.95 wind 9.0 43200 > th dose dependent rect. 17 20
495 138.00 radiation 40.0 1440 > th dose independent rect. 15 18
502 138.01 humidity 80.0 43200 < th dose independent rect. 17 3
518 138.03 humidity 90.0 43200 > th dose dependent rect. 11 2
523 138.04 radiation 20.0 4320 > th dose dependent rect. 7 1
527 138.04 wind 9.0 43200 > th dose dependent rect. 14 19
528 138.04 wind 9.0 43200 > th dose dependent rect. 14 22
530 138.05 humidity 90.0 43200 > th dose independent rect. 12 1
541 138.06 atmosphere 995.0 43200 < th dose independent rect. 4 11
546 138.07 wind 1.0 43200 < th dose independent rect. 18 1
561 138.09 humidity 90.0 43200 < th dose independent rect. 6 1
592 138.12 humidity 80.0 14400 > th dose dependent sin 11 NA
593 138.12 atmosphere 995.0 43200 < th dose dependent rect. 7 18
596 138.12 atmosphere 995.0 43200 < th dose dependent rect. 4 20
598 138.13 humidity 90.0 43200 > th dose independent rect. 6 1
600 138.13 wind 9.0 43200 < th dose independent rect. 22 5
622 138.15 atmosphere 1015.0 14400 > th dose dependent sin 18 NA
627 138.15 atmosphere 995.0 43200 < th dose dependent rect. 3 15
637 138.16 atmosphere 995.0 43200 > th dose independent rect. 5 10
667 138.19 radiation 1.0 43200 < th dose independent rect. 11 1
673 138.19 radiation 1.0 43200 < th dose dependent rect. 11 1
692 138.21 radiation 1.0 43200 > th dose independent rect. 11 1
709 138.22 wind 7.0 43200 > th dose dependent rect. 23 4
714 138.22 wind 9.0 43200 > th dose dependent rect. 20 22
747 138.24 atmosphere 995.0 43200 < th dose dependent sin 19 NA
771 138.26 atmosphere 995.0 43200 > th dose independent rect. 5 8
790 138.27 radiation 1.0 14400 > th dose dependent rect. 18 11
796 138.27 wind 9.0 43200 > th dose dependent rect. 11 23
814 138.29 atmosphere 995.0 43200 > th dose independent rect. 5 6
822 138.29 atmosphere 995.0 43200 < th dose dependent sin 2 NA
824 138.29 wind 9.0 43200 > th dose dependent rect. 8 18
826 138.29 wind 9.0 43200 > th dose dependent rect. 4 23
836 138.30 wind 9.0 43200 > th dose dependent rect. 8 14
841 138.30 wind 9.0 43200 > th dose dependent rect. 4 19
856 138.31 atmosphere 995.0 43200 < th dose independent rect. 5 5
860 138.31 wind 9.0 43200 > th dose dependent no NA NA
861 138.31 atmosphere 995.0 43200 < th dose dependent rect. 5 3
890 138.31 wind 9.0 43200 > th dose dependent rect. 1 22
900 138.31 wind 9.0 43200 > th dose dependent rect. 23 23
903 138.32 atmosphere 995.0 43200 > th dose independent rect. 6 3
908 138.32 atmosphere 995.0 43200 < th dose dependent rect. 4 5
909 138.32 atmosphere 995.0 43200 < th dose dependent rect. 3 7
920 138.32 wind 9.0 43200 > th dose dependent rect. 2 20
962 138.34 wind 9.0 43200 > th dose dependent sin 21 NA
963 138.34 radiation 1.0 4320 < th dose dependent rect. 7 1
967 138.34 wind 9.0 43200 > th dose dependent rect. 9 9
968 138.34 atmosphere 995.0 43200 < th dose dependent rect. 2 9
994 138.36 precipitation 0.1 43200 > th dose dependent rect. 7 2