FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0210600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0279) R2 : 0.00447
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0841 (0.0588) R2dN8 : 0.00578 R2N8 : 0.00447
σ : 0.526
deviance : 126.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.29 0.48 2.92 -0.0125 0.0995 3.3 -0.451 3.15 -0.0943 4.54 5.391 7 12.5 2.4
105.61 0.479 2.92 -0.0663 0.103 2.63 -0.564 -- -0.104 4.42 5.301 6 12.5 2.5
104.73 0.477 2.92 -0.0106 0.105 3.29 -- 3.38 -0.0926 6 5.373 6 12.5 2.37
106.19 0.48 2.92 -0.0226 0.0964 2.47 -- -- -0.0839 5.83 5.345 6 12.5 2.47
105.29 0.478 2.92 -0.00947 -- 3.23 -- 3.32 -0.0904 -- 5.336 6 12.5 2.37
125.74 0.526 2.92 -0.12 0.105 -- 0.0761 -- -0.0969 10.9 -- -- -- --
125.76 0.525 2.92 -0.118 0.105 -- -- -- -0.0968 10.7 -- -- -- --
106.69 0.481 2.92 -0.0239 -- 2.43 -- -- -0.0833 -- 5.349 6 12.5 2.45
106.2 0.48 2.91 -- 0.0997 2.47 -- -- -0.0825 6.31 5.4 6 12.5 2.42
126.45 0.525 2.92 -0.12 -- -- -- -- -0.0974 -- -- -- -- --
126.13 0.525 2.91 -- 0.106 -- -- -- -0.0837 10.8 -- -- -- --
106.71 0.481 2.92 -- -- 2.44 -- -- -0.0807 -- 5.323 6 12.5 2.48
126.83 0.526 2.92 -- -- -- -- -- -0.0841 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.84 wind 5.0 10 > th dose independent rect. 12 2
2 109.39 wind 3.0 10 > th dose dependent rect. 12 2
5 109.79 radiation 20.0 10 > th dose independent rect. 13 1
6 109.88 wind 9.0 10 > th dose independent rect. 13 1
18 109.88 wind 9.0 10 > th dose dependent rect. 13 1
36 110.45 atmosphere 1005.0 10 > th dose dependent rect. 13 1
56 112.12 wind 1.0 90 < th dose dependent rect. 24 1
62 112.63 radiation 1.0 10 > th dose dependent rect. 13 1
87 113.87 humidity 80.0 90 < th dose independent rect. 12 2
93 114.03 radiation 20.0 90 > th dose independent rect. 12 2
101 114.36 radiation 40.0 10 < th dose independent sin 14 NA
102 114.40 radiation 1.0 90 > th dose dependent rect. 12 2
103 114.51 humidity 60.0 10 > th dose independent rect. 12 2
105 114.54 atmosphere 1005.0 90 > th dose independent rect. 12 2
108 114.66 humidity 90.0 30 < th dose dependent rect. 12 2
111 114.72 wind 1.0 90 < th dose independent rect. 24 1
114 114.83 radiation 1.0 10 > th dose independent rect. 12 2
116 114.85 humidity 90.0 10 < th dose independent rect. 12 2
120 114.93 radiation 1.0 90 > th dose independent rect. 12 2
143 115.60 temperature 10.0 10 > th dose independent rect. 12 2
145 115.60 atmosphere 995.0 10 > th dose independent rect. 12 2
146 115.60 atmosphere 1015.0 10 < th dose independent rect. 12 2
147 115.60 precipitation 0.1 10 < th dose independent rect. 12 2
148 115.60 temperature 10.0 10 > th dose independent rect. 14 22
149 115.60 precipitation 0.1 10 < th dose dependent rect. 12 2
164 115.74 radiation 40.0 30 > th dose dependent sin 13 NA
169 115.80 precipitation 0.1 10 < th dose independent rect. 14 22
170 115.80 precipitation 0.1 10 < th dose dependent rect. 14 22
172 115.81 temperature 10.0 1440 > th dose independent rect. 13 2
176 115.81 temperature 10.0 1440 > th dose independent rect. 15 22
189 115.98 wind 9.0 30 < th dose independent rect. 12 2
191 115.99 atmosphere 995.0 10 > th dose independent rect. 14 22
202 116.08 wind 9.0 30 < th dose independent rect. 14 22
219 116.35 temperature 30.0 90 < th dose independent rect. 12 2
239 116.54 temperature 10.0 30 > th dose dependent rect. 12 2
257 116.92 wind 1.0 90 > th dose independent rect. 14 22
258 116.93 atmosphere 1015.0 30 < th dose independent rect. 14 22
260 116.94 radiation 1.0 90 > th dose independent rect. 14 22
261 116.95 humidity 50.0 30 > th dose independent rect. 14 22
264 117.00 radiation 40.0 30 > th dose independent sin 13 NA
295 117.13 temperature 30.0 90 < th dose dependent rect. 12 1
361 117.59 temperature 30.0 30 < th dose independent rect. 14 22
490 118.26 atmosphere 1005.0 30 < th dose dependent rect. 1 1
576 118.69 wind 1.0 10 > th dose independent rect. 12 16
590 118.78 radiation 40.0 30 < th dose independent rect. 14 22
605 118.87 wind 1.0 90 > th dose independent rect. 14 11
607 118.89 humidity 50.0 90 > th dose independent rect. 24 14
612 118.90 radiation 1.0 10 > th dose dependent rect. 12 6
625 118.93 atmosphere 1000.0 90 > th dose independent rect. 24 14
629 118.94 precipitation 0.1 90 < th dose independent rect. 24 14
631 118.94 precipitation 0.1 90 < th dose dependent rect. 24 14
636 119.00 wind 9.0 90 < th dose independent rect. 24 14
637 119.01 temperature 10.0 90 > th dose independent rect. 14 10
638 119.01 temperature 10.0 90 > th dose independent rect. 24 14
642 119.02 atmosphere 1015.0 90 < th dose independent rect. 24 14
706 119.08 precipitation 0.1 90 < th dose independent rect. 14 10
707 119.08 radiation 1.0 10 > th dose independent rect. 18 18
708 119.08 precipitation 0.1 90 < th dose dependent rect. 14 10
719 119.19 radiation 1.0 10 > th dose independent rect. 5 7
750 119.21 atmosphere 995.0 90 > th dose independent rect. 14 10
768 119.22 atmosphere 995.0 270 > th dose dependent rect. 10 4
772 119.23 temperature 10.0 30 > th dose dependent rect. 14 22
821 119.30 wind 9.0 90 < th dose independent rect. 14 10
823 119.30 atmosphere 1015.0 10 < th dose dependent rect. 12 2
828 119.32 atmosphere 1015.0 90 < th dose independent rect. 14 10
832 119.34 radiation 40.0 90 < th dose independent rect. 14 10
834 119.36 radiation 1.0 720 > th dose independent rect. 14 2
857 119.38 atmosphere 1000.0 270 > th dose independent rect. 10 4
862 119.39 radiation 40.0 30 < th dose independent rect. 6 18
884 119.47 humidity 50.0 90 > th dose independent rect. 14 10
894 119.49 temperature 10.0 1440 > th dose independent rect. 15 11
897 119.49 temperature 10.0 1440 > th dose independent rect. 2 13
936 119.56 atmosphere 995.0 1440 > th dose independent rect. 13 2
949 119.58 humidity 90.0 10 < th dose independent rect. 14 22
988 119.64 temperature 30.0 90 < th dose independent rect. 6 6