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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0208500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.89 (0.0483) R2 : 0.781
β1 : 2.9 (0.201) R2dD : 0.141 R2D : 0.0945
β2 : 3.68 (0.123) R2dC : 0.439 R2C : 0.443
β3 : 1.92 (0.255) R2dE : 0.0314 R2E : 0.0254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.5 (1.95) R2dD*E : 0.0245 R2D*E : -0.0433
γ1 : -1.42 (0.105) R2dN8 : 0.129 R2N8 : 0.155
σ : 0.878
deviance : 355.22
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_____
C
peak time of C : 18.2
E
wheather : temperature
threshold : 29.3
memory length : 113
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.36 0.884 6.88 2.86 3.66 1.9 -0.64 11.2 -1.41 18.2 29.4 112 22.5 --
378.48 0.906 6.9 2.43 3.76 3.38 -0.695 -- -1.38 18 29.8 107 23.5 --
355.22 0.878 6.89 2.9 3.68 1.92 -- 11.5 -1.42 18.2 29.3 113 23 --
376.43 0.904 6.93 2.26 3.66 3.23 -- -- -1.46 18.1 29.77 107 22.8 --
782.22 1.3 6.86 3.03 -- 3.49 -- 9.75 -1.7 -- 28.5 513 20.9 --
449.6 0.994 6.92 2.44 3.84 -- -0.155 -- -1.46 17.7 -- -- -- --
449.66 0.993 6.92 2.44 3.83 -- -- -- -1.46 17.7 -- -- -- --
449.91 0.988 6.86 2.38 -- 3.85 -- -- -1.5 -- 14.2 1170 22 --
509.56 1.05 6.99 -- 3.59 3.5 -- -- -1.65 18.2 29.8 107 22.3 --
1212.48 1.63 6.86 2.32 -- -- -- -- -1.55 -- -- -- -- --
606.52 1.15 6.98 -- 3.8 -- -- -- -1.73 17.8 -- -- -- --
598.01 1.14 6.92 -- -- 3.85 -- -- -1.76 -- 14.79 1202 22.3 --
1354.36 1.72 6.92 -- -- -- -- -- -1.81 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.89 temperature 25 270 > th dose dependent sin 6 NA
2 370.91 temperature 25 270 > th dose dependent rect. 9 1
4 372.08 temperature 25 90 > th dose dependent sin 3 NA
8 374.37 temperature 15 10 > th dose dependent rect. 9 20
9 374.81 temperature 25 90 > th dose dependent rect. 8 7
10 374.83 temperature 25 270 > th dose dependent rect. 8 3
14 376.06 temperature 25 270 > th dose dependent rect. 6 7
19 376.19 temperature 10 270 > th dose dependent rect. 6 21
24 376.39 radiation 30 270 < th dose dependent rect. 3 14
25 376.46 radiation 1 270 > th dose dependent sin 5 NA
29 376.65 temperature 25 270 > th dose dependent rect. 19 18
38 377.12 radiation 30 270 < th dose dependent sin 4 NA
44 377.39 radiation 1 90 > th dose dependent rect. 8 11
62 377.60 temperature 25 270 > th dose dependent rect. 18 20
90 378.59 radiation 20 270 < th dose independent rect. 3 14
102 378.90 radiation 1 270 > th dose dependent rect. 15 22
108 379.13 temperature 25 10 > th dose dependent rect. 9 7
132 379.86 temperature 30 90 > th dose independent sin 4 NA
139 380.05 temperature 25 10 > th dose dependent rect. 9 9
178 381.03 radiation 40 270 > th dose independent rect. 9 1
194 381.72 radiation 40 270 > th dose independent rect. 15 19
222 382.14 temperature 25 10 > th dose dependent rect. 9 16
226 382.25 radiation 30 270 > th dose dependent sin 11 NA
228 382.37 temperature 25 10 > th dose dependent rect. 9 13
238 382.49 radiation 1 10 > th dose dependent rect. 9 10
251 382.57 radiation 1 10 > th dose dependent rect. 9 22
256 382.61 radiation 20 270 > th dose independent sin 5 NA
257 382.62 temperature 30 90 < th dose independent sin 4 NA
259 382.63 radiation 30 270 > th dose dependent rect. 15 19
279 382.89 radiation 40 270 > th dose independent sin 11 NA
281 382.98 radiation 20 270 < th dose independent sin 6 NA
286 383.08 radiation 20 270 > th dose independent rect. 15 22
354 383.88 radiation 20 270 < th dose independent rect. 10 22
375 384.14 temperature 30 90 > th dose independent rect. 8 7
395 384.20 radiation 40 10 > th dose independent rect. 13 23
411 384.45 temperature 30 90 < th dose dependent rect. 5 16
412 384.46 radiation 40 270 < th dose dependent rect. 9 23
415 384.52 temperature 30 90 < th dose independent rect. 4 17
433 384.81 radiation 30 270 > th dose dependent rect. 8 2
442 384.87 temperature 10 90 > th dose dependent rect. 8 23
453 385.06 radiation 30 270 < th dose dependent rect. 22 23
511 385.68 radiation 40 270 < th dose independent rect. 9 23
529 385.90 radiation 1 270 > th dose dependent rect. 6 8
530 385.91 radiation 20 270 < th dose independent rect. 1 20
546 386.07 temperature 30 270 < th dose independent rect. 3 15
559 386.10 radiation 40 270 > th dose independent rect. 14 21
609 386.30 temperature 30 10 < th dose dependent rect. 5 17
615 386.36 radiation 20 270 < th dose independent rect. 23 22
655 386.72 temperature 25 10 > th dose dependent rect. 6 10
750 387.25 radiation 40 10 < th dose independent rect. 5 17
813 387.53 temperature 10 270 > th dose dependent rect. 17 22
814 387.54 radiation 1 90 > th dose dependent sin 0 NA
822 387.66 temperature 25 30 > th dose dependent rect. 17 23
934 388.39 radiation 30 270 < th dose dependent rect. 1 20
940 388.43 radiation 10 90 > th dose dependent no NA NA