FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0208200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cysteine proteinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0535) R2 : 0.835
β1 : 2.3 (0.195) R2dD : 0.0526 R2D : 0.0468
β2 : 2.79 (0.166) R2dC : 0.156 R2C : 0.414
β3 : 3.49 (0.151) R2dE : 0.3 R2E : 0.575
β4 : 5.21 (0.553) R2dD*C : 0.0324 R2D*C : 0.0294
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.7 (0.114) R2dN8 : 0.0179 R2N8 : 0.0171
σ : 0.991
deviance : 452.97
__
_____
C
peak time of C : 8.59
E
wheather : wind
threshold : 4.238
memory length : 85
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.27
open length of G : 5.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
452.61 1 4.66 2.36 2.73 3.52 4.71 0.896 0.71 8.67 4.201 90 3.22 5.68
452.97 0.991 4.67 2.3 2.79 3.49 5.21 -- 0.7 8.59 4.238 85 3.27 5.68
504.54 1.05 4.66 2.66 2.66 3.56 -- 3.47 0.715 8.76 4.292 83 3.32 5.72
539.84 1.08 4.67 2.45 2.73 3.49 -- -- 0.678 8.64 4.281 79 3.3 5.69
748.1 1.27 4.66 2.51 -- 4.65 -- 2.97 0.886 -- 5.09 77 3.34 6.05
817.61 1.34 4.52 2.51 5.45 -- 5.63 -- 1.01 7.44 -- -- -- --
904.12 1.41 4.53 2.64 5.46 -- -- -- 1 7.38 -- -- -- --
774.17 1.3 4.77 2.36 -- 5 -- -- 0.584 -- 5.068 104 3.14 5.88
698.65 1.23 4.72 -- 2.69 3.51 -- -- 0.458 8.56 4.5 80 3.28 5.77
2491 2.33 4.65 2.73 -- -- -- -- 1.09 -- -- -- -- --
1087.52 1.54 4.59 -- 5.48 -- -- -- 0.708 7.35 -- -- -- --
920.1 1.41 4.79 -- -- 5.01 -- -- 0.517 -- 4.9 107 3.11 6.23
2687.23 2.42 4.72 -- -- -- -- -- 0.789 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 462.13 temperature 10.0 270 > th dose dependent rect. 3 2
3 466.30 wind 5.0 90 < th dose independent rect. 3 6
4 469.47 atmosphere 995.0 90 > th dose dependent rect. 3 6
5 471.64 wind 9.0 90 < th dose dependent rect. 3 6
6 471.72 temperature 10.0 90 > th dose dependent rect. 3 6
7 472.50 humidity 70.0 90 > th dose independent rect. 3 6
11 475.67 radiation 30.0 90 < th dose independent rect. 3 6
12 476.22 wind 5.0 270 < th dose independent rect. 3 2
18 479.68 wind 9.0 90 < th dose independent rect. 9 18
21 480.41 precipitation 0.1 90 < th dose independent rect. 3 6
22 480.41 precipitation 0.1 90 < th dose dependent rect. 3 6
23 480.80 temperature 30.0 90 < th dose independent rect. 3 6
25 481.64 atmosphere 995.0 270 > th dose dependent rect. 3 2
27 482.72 precipitation 0.1 270 < th dose independent rect. 3 2
28 482.72 precipitation 0.1 270 < th dose dependent rect. 3 2
29 482.86 radiation 40.0 90 < th dose dependent rect. 3 6
31 482.93 temperature 10.0 90 > th dose independent rect. 3 6
34 482.93 atmosphere 995.0 90 > th dose independent rect. 3 6
35 482.93 atmosphere 1015.0 90 < th dose independent rect. 3 6
36 482.93 temperature 10.0 90 > th dose independent rect. 9 18
41 485.20 radiation 40.0 90 < th dose dependent rect. 3 8
47 487.63 radiation 1.0 270 < th dose independent rect. 3 2
49 487.64 radiation 10.0 270 < th dose dependent rect. 3 2
55 488.86 temperature 10.0 270 > th dose independent rect. 3 2
57 488.86 temperature 30.0 270 < th dose independent rect. 3 2
58 488.86 humidity 50.0 270 > th dose independent rect. 3 2
61 488.86 atmosphere 995.0 270 > th dose independent rect. 3 2
62 488.86 atmosphere 1010.0 270 < th dose independent rect. 3 2
67 488.86 temperature 10.0 270 > th dose independent rect. 5 22
71 489.58 wind 9.0 270 < th dose independent rect. 5 22
73 490.76 wind 9.0 270 < th dose dependent rect. 3 2
76 492.17 humidity 50.0 90 > th dose dependent rect. 3 6
77 492.40 precipitation 0.1 90 < th dose independent rect. 9 18
78 492.40 precipitation 0.1 90 < th dose dependent rect. 9 18
95 498.21 precipitation 0.1 270 < th dose independent rect. 5 22
96 498.21 precipitation 0.1 270 < th dose dependent rect. 5 22
98 498.90 radiation 20.0 90 < th dose independent rect. 3 8
99 498.90 radiation 40.0 90 < th dose independent rect. 3 8
100 499.00 humidity 50.0 270 > th dose dependent rect. 3 2
129 504.26 humidity 50.0 90 > th dose dependent rect. 3 8
131 505.22 radiation 40.0 270 < th dose dependent rect. 1 8
135 505.76 radiation 40.0 10 < th dose dependent rect. 4 5
148 507.04 wind 5.0 270 < th dose independent rect. 2 4
162 507.84 atmosphere 995.0 90 > th dose independent rect. 9 18
182 510.74 wind 1.0 270 > th dose independent rect. 3 2
187 512.30 atmosphere 1015.0 90 < th dose independent rect. 9 18
192 513.55 precipitation 0.1 270 < th dose independent rect. 2 4
193 513.55 precipitation 0.1 270 < th dose dependent rect. 2 4
206 515.79 radiation 40.0 90 < th dose dependent rect. 3 20
210 516.33 radiation 20.0 270 < th dose independent rect. 1 8
217 516.97 radiation 40.0 90 < th dose independent rect. 3 20
226 517.62 wind 9.0 270 < th dose independent rect. 6 20
247 519.22 temperature 10.0 270 > th dose independent rect. 2 4
249 519.22 temperature 30.0 270 < th dose independent rect. 2 4
250 519.22 humidity 50.0 270 > th dose independent rect. 2 4
253 519.22 atmosphere 995.0 270 > th dose independent rect. 2 4
254 519.22 atmosphere 1015.0 270 < th dose independent rect. 2 4
258 519.22 temperature 10.0 270 > th dose independent rect. 6 20
260 519.39 precipitation 0.1 270 < th dose independent rect. 6 20
261 519.39 precipitation 0.1 270 < th dose dependent rect. 6 20
457 530.96 humidity 70.0 90 > th dose independent rect. 3 8
469 532.07 radiation 20.0 90 < th dose independent rect. 3 20
490 533.11 temperature 10.0 270 > th dose dependent rect. 21 4
491 533.17 humidity 50.0 270 > th dose dependent rect. 1 8
507 534.41 wind 1.0 270 > th dose independent rect. 2 4
508 534.47 humidity 50.0 30 > th dose independent rect. 9 19
513 534.79 humidity 70.0 270 > th dose independent rect. 1 8
523 535.43 precipitation 0.1 270 < th dose independent rect. 21 4
524 535.43 precipitation 0.1 270 < th dose dependent rect. 21 4
525 535.45 radiation 10.0 10 < th dose independent rect. 4 3
528 535.69 wind 7.0 270 < th dose independent rect. 21 4
539 536.63 radiation 1.0 270 < th dose dependent rect. 21 4
540 536.65 temperature 10.0 270 > th dose independent rect. 21 4
541 536.65 temperature 30.0 270 < th dose independent rect. 21 4
542 536.65 humidity 50.0 270 > th dose independent rect. 21 4
545 536.65 atmosphere 995.0 270 > th dose independent rect. 21 4
546 536.65 radiation 1.0 270 < th dose independent rect. 21 4
551 536.65 temperature 10.0 270 > th dose independent rect. 1 20
585 538.25 radiation 10.0 270 < th dose dependent rect. 2 16
588 538.51 radiation 30.0 270 < th dose independent rect. 14 16
589 538.59 precipitation 0.1 270 < th dose independent rect. 1 20
590 538.59 precipitation 0.1 270 < th dose dependent rect. 1 20
593 538.73 wind 5.0 90 < th dose independent rect. 23 4
603 539.27 precipitation 0.1 270 < th dose independent rect. 6 9
604 539.27 precipitation 0.1 270 < th dose dependent rect. 6 9
633 539.65 wind 9.0 270 < th dose independent rect. 20 6
636 539.71 radiation 1.0 270 < th dose dependent rect. 20 6
637 539.73 temperature 10.0 1440 > th dose independent rect. 4 6
640 539.73 temperature 10.0 270 > th dose independent rect. 20 6
641 539.73 temperature 30.0 270 < th dose independent rect. 20 6
642 539.73 humidity 50.0 270 > th dose independent rect. 20 6
645 539.73 atmosphere 995.0 1440 > th dose independent rect. 4 6
646 539.73 atmosphere 995.0 270 > th dose independent rect. 20 6
647 539.73 atmosphere 1015.0 1440 < th dose independent rect. 4 6
648 539.73 radiation 1.0 270 < th dose independent rect. 20 6
653 539.73 temperature 10.0 270 > th dose independent rect. 2 18
654 539.73 temperature 10.0 1440 > th dose independent rect. 10 18
657 539.73 atmosphere 1015.0 270 < th dose independent rect. 2 18
669 540.02 wind 9.0 90 < th dose dependent rect. 3 8
671 540.19 precipitation 0.1 270 < th dose independent rect. 20 6
674 540.19 precipitation 0.1 270 < th dose dependent rect. 20 6
677 540.27 precipitation 0.1 270 < th dose independent rect. 2 18
678 540.27 precipitation 0.1 270 < th dose dependent rect. 2 18
681 540.46 wind 9.0 90 < th dose dependent rect. 21 6
693 540.85 wind 9.0 270 < th dose independent rect. 6 9
701 541.14 temperature 10.0 270 > th dose dependent rect. 23 1
705 541.39 temperature 10.0 90 > th dose independent rect. 23 4
706 541.39 temperature 30.0 90 < th dose independent rect. 23 4
707 541.39 humidity 50.0 90 > th dose independent rect. 23 4
710 541.39 atmosphere 995.0 90 > th dose independent rect. 23 4
711 541.39 radiation 1.0 90 < th dose independent rect. 23 4
716 541.39 temperature 10.0 90 > th dose independent rect. 3 20
718 541.39 radiation 1.0 90 < th dose dependent rect. 23 4
732 541.80 wind 9.0 90 < th dose dependent rect. 23 4
736 541.99 temperature 10.0 270 > th dose independent rect. 6 9
737 541.99 atmosphere 1015.0 270 < th dose independent rect. 6 9
738 541.99 temperature 10.0 270 > th dose independent rect. 15 15
759 542.25 precipitation 0.1 90 < th dose independent rect. 23 4
760 542.25 precipitation 0.1 90 < th dose dependent rect. 23 4
762 542.46 atmosphere 995.0 270 > th dose independent rect. 6 20
763 542.51 radiation 10.0 10 < th dose independent rect. 4 18
768 542.58 wind 9.0 270 < th dose independent rect. 1 20
797 543.28 temperature 30.0 270 < th dose independent rect. 1 8
833 544.26 temperature 10.0 90 > th dose dependent rect. 9 18
839 544.49 atmosphere 995.0 270 > th dose independent rect. 6 9
846 544.57 atmosphere 1015.0 270 < th dose independent rect. 1 20
865 544.78 wind 9.0 270 < th dose independent rect. 2 18
912 546.13 wind 9.0 90 < th dose dependent rect. 3 18
919 546.39 wind 9.0 270 < th dose independent rect. 15 15
925 546.66 humidity 50.0 90 > th dose dependent rect. 21 6
960 547.34 atmosphere 995.0 270 > th dose independent rect. 5 22
974 547.69 wind 9.0 90 < th dose independent rect. 3 20
984 548.38 humidity 50.0 90 > th dose dependent rect. 23 4
999 548.90 temperature 30.0 90 < th dose independent rect. 3 8