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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0206500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0493) R2 : 0.425
β1 : 1.01 (0.181) R2dD : 0.0408 R2D : -0.12
β2 : 0.534 (0.118) R2dC : 0.0261 R2C : -0.0863
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.85 (0.105) R2dN8 : 0.519 R2N8 : 0.357
σ : 0.928
deviance : 392.33
__
_____
C
peak time of C : 0.948
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
366.06 0.899 3.11 1.01 0.21 0.595 1.65 1.1 1.84 17.7 81.02 35 -- --
371.12 0.897 3.11 1.12 0.16 0.559 1.35 -- 1.84 19.3 81 40 -- --
372.13 0.898 3.1 1 0.207 0.563 -- 0.845 1.85 18.9 81.4 34 -- --
376.3 0.903 3.1 1.03 0.216 0.565 -- -- 1.85 19.1 81.55 40 -- --
374.31 0.901 3.1 1.01 -- 0.532 -- 0.843 1.85 -- 82 34 -- --
390.67 0.927 3.1 1.04 0.527 -- 0.694 -- 1.85 0.301 -- -- -- --
392.33 0.928 3.1 1.01 0.534 -- -- -- 1.85 0.948 -- -- -- --
378.65 0.906 3.1 1.03 -- 0.532 -- -- 1.85 -- 81.9 34 -- --
401.99 0.934 3.12 -- 0.246 0.597 -- -- 1.76 19.2 83 67 -- --
410.07 0.946 3.1 1.03 -- -- -- -- 1.86 -- -- -- -- --
419.14 0.958 3.13 -- 0.55 -- -- -- 1.73 1.03 -- -- -- --
405.04 0.937 3.12 -- -- 0.556 -- -- 1.75 -- 83.29 63 -- --
437.98 0.977 3.12 -- -- -- -- -- 1.74 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 353.37 temperature 25.0 270 < th dose independent rect. 16 2
2 353.85 temperature 25.0 10 < th dose dependent rect. 12 8
4 353.96 temperature 25.0 270 < th dose dependent rect. 16 2
14 355.78 temperature 25.0 270 < th dose independent rect. 15 4
18 356.54 temperature 25.0 10 < th dose dependent rect. 16 4
26 357.08 temperature 25.0 270 < th dose independent rect. 13 7
35 357.89 temperature 25.0 10 < th dose dependent rect. 10 10
56 358.84 wind 1.0 90 < th dose independent rect. 2 1
70 359.70 temperature 25.0 10 < th dose dependent rect. 8 13
113 361.56 humidity 70.0 720 > th dose independent rect. 17 1
114 361.60 humidity 70.0 720 > th dose independent rect. 17 12
134 362.63 humidity 80.0 1440 < th dose independent rect. 19 1
135 362.64 humidity 70.0 720 > th dose independent rect. 17 3
136 362.72 temperature 30.0 720 < th dose independent rect. 17 10
141 362.91 wind 1.0 90 < th dose dependent rect. 2 1
155 363.58 humidity 80.0 10 > th dose independent rect. 6 23
158 363.63 wind 5.0 90 > th dose dependent rect. 17 3
165 363.81 temperature 30.0 30 < th dose dependent sin 19 NA
180 364.25 precipitation 0.1 90 < th dose independent sin 1 NA
181 364.25 precipitation 0.1 90 < th dose dependent sin 1 NA
203 364.83 humidity 80.0 30 > th dose independent rect. 16 23
216 365.18 humidity 80.0 720 > th dose independent rect. 19 2
217 365.18 precipitation 0.1 270 > th dose dependent sin 1 NA
237 365.41 humidity 80.0 30 > th dose independent rect. 12 23
246 365.53 wind 5.0 30 > th dose independent rect. 17 4
249 365.57 temperature 20.0 30 > th dose dependent sin 19 NA
258 365.64 humidity 80.0 4320 < th dose dependent rect. 22 5
264 365.71 precipitation 0.1 90 > th dose independent sin 1 NA
265 365.83 temperature 20.0 720 > th dose dependent rect. 5 10
270 365.87 humidity 80.0 30 < th dose independent rect. 21 22
276 365.93 humidity 80.0 4320 < th dose dependent rect. 1 1
280 365.97 temperature 20.0 720 > th dose dependent rect. 7 8
300 366.15 humidity 50.0 30 > th dose dependent rect. 17 21
304 366.22 humidity 50.0 720 > th dose dependent rect. 17 1
313 366.32 humidity 80.0 10 > th dose dependent sin 20 NA
318 366.39 humidity 80.0 30 > th dose independent rect. 19 23
320 366.39 temperature 15.0 30 > th dose dependent rect. 14 12
328 366.44 humidity 90.0 10 < th dose independent sin 20 NA
330 366.45 humidity 80.0 30 > th dose independent rect. 9 23
331 366.46 humidity 80.0 30 > th dose independent no NA NA
389 366.88 temperature 10.0 720 > th dose dependent rect. 5 12
415 367.07 temperature 30.0 14400 > th dose independent rect. 17 1
419 367.10 humidity 80.0 30 > th dose independent rect. 6 17
438 367.21 humidity 80.0 4320 < th dose dependent rect. 22 1
458 367.33 temperature 10.0 720 > th dose dependent rect. 10 7
464 367.34 humidity 80.0 10 > th dose dependent rect. 8 15
468 367.39 temperature 30.0 14400 < th dose independent rect. 17 1
475 367.44 temperature 15.0 720 > th dose dependent rect. 10 5
478 367.46 humidity 80.0 30 > th dose independent rect. 21 23
493 367.54 humidity 70.0 720 > th dose independent rect. 17 6
496 367.54 humidity 70.0 10 > th dose dependent rect. 6 23
497 367.55 humidity 80.0 10 > th dose independent rect. 8 15
505 367.59 temperature 20.0 30 > th dose dependent rect. 5 21
569 367.99 temperature 15.0 720 > th dose dependent rect. 14 1
585 368.11 precipitation 0.1 30 < th dose independent rect. 3 23
587 368.11 precipitation 0.1 30 < th dose dependent rect. 3 23
588 368.12 temperature 25.0 720 > th dose independent rect. 7 8
624 368.29 humidity 80.0 10 > th dose dependent rect. 6 17
637 368.37 humidity 80.0 10 > th dose independent sin 20 NA
661 368.43 precipitation 0.1 10 > th dose independent rect. 7 13
666 368.43 precipitation 0.1 10 > th dose dependent rect. 7 13
674 368.45 humidity 80.0 10 > th dose dependent rect. 8 12
675 368.46 humidity 60.0 720 > th dose dependent rect. 17 3
681 368.50 humidity 80.0 30 > th dose independent rect. 2 23
686 368.53 humidity 80.0 30 < th dose independent rect. 7 23
687 368.54 humidity 80.0 30 < th dose independent no NA NA
690 368.54 humidity 80.0 30 < th dose independent rect. 3 23
691 368.54 humidity 80.0 30 < th dose independent rect. 5 23
696 368.55 humidity 80.0 30 < th dose independent rect. 1 23
697 368.55 humidity 80.0 30 < th dose independent rect. 23 23
701 368.56 temperature 20.0 30 > th dose dependent rect. 14 10
705 368.59 temperature 30.0 14400 < th dose independent rect. 17 15
706 368.60 temperature 30.0 14400 < th dose independent rect. 17 13
721 368.66 temperature 25.0 30 > th dose independent rect. 14 6
729 368.69 temperature 30.0 14400 < th dose independent rect. 17 7
741 368.72 temperature 20.0 270 > th dose dependent rect. 5 17
742 368.73 temperature 25.0 720 > th dose independent rect. 7 2
747 368.74 atmosphere 1005.0 720 > th dose independent rect. 17 1
749 368.74 temperature 20.0 30 > th dose dependent rect. 5 17
751 368.75 precipitation 0.1 270 > th dose dependent rect. 4 15
767 368.84 temperature 20.0 720 > th dose dependent rect. 12 3
776 368.86 temperature 20.0 30 > th dose dependent rect. 8 14
785 368.88 temperature 20.0 270 > th dose dependent rect. 10 12
803 368.94 temperature 20.0 720 > th dose dependent sin 1 NA
809 368.95 precipitation 0.1 10 > th dose independent rect. 4 16
814 368.95 temperature 20.0 30 > th dose dependent rect. 8 18
856 369.07 humidity 70.0 90 > th dose independent rect. 12 11
867 369.11 temperature 30.0 14400 > th dose dependent rect. 17 1
880 369.15 humidity 80.0 30 < th dose independent rect. 18 23
884 369.15 radiation 20.0 270 < th dose dependent rect. 16 22
909 369.25 radiation 20.0 270 < th dose independent sin 20 NA
934 369.28 temperature 10.0 30 > th dose dependent rect. 3 23
938 369.29 precipitation 0.1 720 > th dose dependent rect. 5 9
953 369.32 temperature 10.0 720 > th dose dependent sin 0 NA
966 369.35 precipitation 0.1 720 < th dose independent rect. 3 23
973 369.35 precipitation 0.1 720 < th dose dependent rect. 3 23
989 369.37 temperature 30.0 720 < th dose dependent rect. 9 5