Os04g0206200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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Os04g0206200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.96 | 0.404 | 10.9 | -1.45 | 0.62 | -0.385 | -0.397 | -0.421 | -0.348 | 19.2 | 24.6 | 264 | -- | -- |
| 74.36 | 0.402 | 10.9 | -1.58 | 0.623 | -0.406 | -0.265 | -- | -0.377 | 19.2 | 24.41 | 244 | -- | -- |
| 73.99 | 0.401 | 10.9 | -1.46 | 0.655 | -0.387 | -- | -0.371 | -0.351 | 19.3 | 24.3 | 229 | -- | -- |
| 74.43 | 0.402 | 10.9 | -1.58 | 0.631 | -0.415 | -- | -- | -0.401 | 19.4 | 24.43 | 234 | -- | -- |
| 87.91 | 0.437 | 10.9 | -1.53 | -- | -0.651 | -- | -0.378 | -0.424 | -- | 25.6 | 364 | -- | -- |
| 83.74 | 0.429 | 10.9 | -1.45 | 0.811 | -- | -0.292 | -- | -0.186 | 18.7 | -- | -- | -- | -- |
| 83.94 | 0.429 | 10.9 | -1.44 | 0.809 | -- | -- | -- | -0.187 | 18.7 | -- | -- | -- | -- |
| 87.26 | 0.435 | 10.9 | -1.65 | -- | -0.685 | -- | -- | -0.489 | -- | 25.25 | 358 | -- | -- |
| 137.29 | 0.546 | 10.9 | -- | 0.672 | -0.238 | -- | -- | -0.135 | 19 | 25 | 266 | -- | -- |
| 118.14 | 0.508 | 10.9 | -1.46 | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
| 138.8 | 0.551 | 10.9 | -- | 0.827 | -- | -- | -- | -0.0261 | 18.6 | -- | -- | -- | -- |
| 156.54 | 0.583 | 10.9 | -- | -- | -0.507 | -- | -- | -0.236 | -- | 25.37 | 339 | -- | -- |
| 174.47 | 0.617 | 10.8 | -- | -- | -- | -- | -- | -0.0406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 4 | 66.35 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 5 | 66.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 18 | 67.55 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 32 | 68.31 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 33 | 68.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 42 | 68.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 69 | 69.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 72 | 69.08 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 82 | 69.23 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 87 | 69.27 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 103 | 69.48 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 139 | 69.88 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 13 |
| 154 | 70.07 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 16 |
| 171 | 70.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 285 | 71.01 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 317 | 71.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 320 | 71.25 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 14 |
| 381 | 71.51 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 443 | 71.79 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 462 | 71.89 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 970 | 73.71 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 7 | 18 |