Os04g0205200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0205200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.54 | 0.732 | 5.04 | 4 | 1.57 | 1.29 | 1.89 | 1.7 | -1.11 | 10.5 | 45 | 1505 | -- | -- |
| 247.21 | 0.732 | 5.03 | 4.2 | 1.59 | 1.46 | 1.82 | -- | -1.07 | 10.7 | 36.19 | 1575 | -- | -- |
| 250.57 | 0.737 | 5.07 | 4.02 | 1.21 | 1.54 | -- | 3.19 | -1.14 | 9.89 | 42.61 | 1141 | -- | -- |
| 260.89 | 0.752 | 5.03 | 4.28 | 1.58 | 1.48 | -- | -- | -1.06 | 10.7 | 36.11 | 1556 | -- | -- |
| 284.32 | 0.785 | 5.06 | 3.95 | -- | 2.49 | -- | 3.29 | -1.02 | -- | 62.97 | 903 | -- | -- |
| 301.64 | 0.814 | 5.04 | 4.12 | 1.56 | -- | 1.99 | -- | -1.13 | 10.5 | -- | -- | -- | -- |
| 317.83 | 0.835 | 5.04 | 4.2 | 1.55 | -- | -- | -- | -1.12 | 10.5 | -- | -- | -- | -- |
| 301.56 | 0.809 | 5.05 | 4.26 | -- | 2.62 | -- | -- | -1 | -- | 60.13 | 914 | -- | -- |
| 682.85 | 1.22 | 5.02 | -- | 1.26 | 2.59 | -- | -- | -1.03 | 10.8 | 83.98 | 2074 | -- | -- |
| 465.82 | 1.01 | 5.08 | 4.18 | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
| 783.54 | 1.31 | 5.15 | -- | 1.53 | -- | -- | -- | -1.59 | 10.3 | -- | -- | -- | -- |
| 734.32 | 1.26 | 5.08 | -- | -- | 2.71 | -- | -- | -1.14 | -- | 85.55 | 813 | -- | -- |
| 925.98 | 1.42 | 5.19 | -- | -- | -- | -- | -- | -1.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 3 | 241.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 5 | 241.99 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 7 | 242.07 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 31 | 242.48 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 38 | 242.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 50 | 242.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 73 | 242.93 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 80 | 243.00 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 84 | 243.03 | humidity | 60 | 1440 | > th | dose dependent | sin | 2 | NA |
| 85 | 243.03 | humidity | 60 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 91 | 243.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 93 | 243.08 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 138 | 243.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 163 | 243.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 229 | 243.85 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 255 | 243.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 270 | 244.02 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 298 | 244.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 340 | 244.40 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 352 | 244.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 468 | 244.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 544 | 245.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 598 | 245.58 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 638 | 245.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 774 | 246.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 987 | 247.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 23 |