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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0203700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0366) R2 : 0.177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.761 (0.077) R2dN8 : 0.228 R2N8 : 0.177
σ : 0.689
deviance : 217.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.59 0.672 2.92 0.413 0.204 1.57 -0.606 3.45 0.822 5.51 19.3 1525 -- --
208.69 0.673 2.88 0.535 0.198 0.394 -0.763 -- 0.842 5.67 20.41 1410 -- --
204.84 0.667 2.92 0.414 0.237 1.9 -- 4.14 0.806 4.15 18.67 1283 -- --
208.66 0.673 2.87 0.532 0.2 0.318 -- -- 0.865 3.83 31.8 1622 -- --
207.57 0.671 2.92 0.418 -- 1.98 -- 4.36 0.825 -- 18.43 1505 -- --
209.7 0.679 2.89 0.438 0.183 -- -0.741 -- 0.803 5.84 -- -- -- --
210.41 0.679 2.89 0.43 0.204 -- -- -- 0.804 3.89 -- -- -- --
209.94 0.678 2.87 0.52 -- 0.373 -- -- 0.876 -- 30.4 1744 -- --
215.13 0.683 2.9 -- 0.216 0.0919 -- -- 0.771 3.88 33.34 1555 -- --
212.7 0.681 2.89 0.438 -- -- -- -- 0.81 -- -- -- -- --
215.29 0.686 2.9 -- 0.213 -- -- -- 0.757 3.86 -- -- -- --
216.64 0.688 2.89 -- -- 0.231 -- -- 0.797 -- 30.4 1744 -- --
217.77 0.689 2.9 -- -- -- -- -- 0.761 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.98 wind 5.0 10 > th dose independent rect. 10 1
5 190.98 wind 5.0 10 > th dose dependent rect. 10 1
9 191.10 wind 7.0 90 > th dose dependent rect. 8 1
27 191.59 humidity 90.0 90 > th dose independent rect. 8 1
32 192.35 humidity 90.0 90 > th dose dependent rect. 8 1
40 193.20 wind 9.0 90 > th dose dependent rect. 22 12
68 195.76 temperature 20.0 30 > th dose independent rect. 2 1
74 196.07 humidity 90.0 30 > th dose independent rect. 2 1
75 196.10 atmosphere 1000.0 30 > th dose independent rect. 2 1
76 196.11 temperature 25.0 30 < th dose independent rect. 2 1
81 196.25 temperature 10.0 30 > th dose dependent rect. 2 1
83 196.27 humidity 50.0 30 > th dose dependent rect. 2 1
86 196.30 wind 9.0 30 < th dose independent rect. 2 1
87 196.30 temperature 10.0 30 > th dose independent rect. 2 1
90 196.30 humidity 50.0 30 > th dose independent rect. 2 1
94 196.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 196.30 radiation 1.0 30 < th dose independent rect. 2 1
101 196.30 precipitation 0.1 30 < th dose independent rect. 2 1
102 196.30 temperature 10.0 30 > th dose independent rect. 3 23
103 196.30 radiation 1.0 30 < th dose dependent rect. 2 1
108 196.30 precipitation 0.1 30 < th dose dependent rect. 2 1
109 196.33 wind 5.0 30 < th dose independent rect. 2 1
112 196.37 atmosphere 995.0 30 > th dose dependent rect. 2 1
114 196.47 wind 9.0 30 < th dose dependent rect. 2 1
116 196.52 atmosphere 1015.0 30 < th dose dependent rect. 2 1
131 196.90 temperature 30.0 30 < th dose dependent rect. 2 1
134 197.00 wind 7.0 4320 < th dose independent rect. 5 1
144 197.58 wind 1.0 30 > th dose independent rect. 2 1
215 199.68 temperature 25.0 90 < th dose dependent rect. 17 2
216 199.75 wind 9.0 30 < th dose independent rect. 3 23
222 200.01 temperature 25.0 10 < th dose dependent rect. 17 3
223 200.06 humidity 90.0 10 < th dose independent rect. 4 1
251 200.60 temperature 25.0 30 > th dose independent rect. 4 1
257 200.77 wind 1.0 30 > th dose dependent rect. 4 1
261 201.03 temperature 25.0 90 > th dose dependent rect. 4 1
280 201.29 atmosphere 1000.0 720 > th dose dependent rect. 17 1
308 201.75 wind 1.0 30 > th dose independent rect. 4 1
326 202.02 temperature 25.0 90 < th dose independent rect. 16 4
338 202.19 temperature 10.0 1440 > th dose independent rect. 5 1
341 202.19 temperature 30.0 1440 < th dose independent rect. 5 1
345 202.19 humidity 50.0 1440 > th dose independent rect. 5 1
354 202.19 atmosphere 995.0 1440 > th dose independent rect. 5 1
355 202.19 atmosphere 1015.0 1440 < th dose independent rect. 5 1
356 202.19 radiation 20.0 1440 < th dose independent rect. 5 1
365 202.19 temperature 10.0 1440 > th dose independent rect. 6 23
368 202.20 wind 9.0 14400 < th dose independent rect. 6 4
401 202.46 wind 5.0 90 > th dose dependent rect. 17 3
402 202.47 atmosphere 1005.0 720 > th dose independent rect. 17 1
406 202.51 atmosphere 1005.0 90 > th dose dependent rect. 4 1
409 202.54 temperature 25.0 10 < th dose independent rect. 17 4
412 202.56 temperature 25.0 270 < th dose independent rect. 16 2
415 202.59 precipitation 0.1 30 < th dose independent rect. 3 23
416 202.59 precipitation 0.1 30 < th dose dependent rect. 3 23
420 202.63 wind 9.0 4320 < th dose independent rect. 24 5
442 202.86 temperature 25.0 10 < th dose dependent rect. 17 1
453 202.90 wind 5.0 90 > th dose independent rect. 17 3
462 202.94 atmosphere 995.0 90 > th dose dependent rect. 17 12
472 203.00 wind 3.0 4320 > th dose dependent rect. 3 1
477 203.04 wind 7.0 90 > th dose independent rect. 17 17
484 203.11 humidity 90.0 10 < th dose dependent rect. 4 1
500 203.18 atmosphere 1015.0 90 < th dose independent rect. 5 23
503 203.21 atmosphere 1005.0 720 > th dose independent rect. 15 14
505 203.22 temperature 30.0 14400 > th dose independent rect. 17 1
510 203.23 radiation 40.0 720 < th dose dependent rect. 15 14
517 203.27 wind 1.0 43200 < th dose independent rect. 24 5
519 203.29 wind 9.0 14400 > th dose independent rect. 7 3
530 203.30 wind 5.0 90 > th dose dependent rect. 17 17
533 203.32 precipitation 0.1 90 < th dose independent rect. 5 23
534 203.32 precipitation 0.1 90 < th dose dependent rect. 5 23
538 203.37 temperature 30.0 14400 < th dose independent rect. 17 1
555 203.44 temperature 10.0 90 > th dose dependent rect. 5 23
563 203.49 wind 1.0 43200 > th dose independent rect. 24 5
568 203.51 wind 9.0 4320 < th dose independent rect. 2 3
569 203.51 wind 9.0 43200 < th dose independent rect. 24 5
576 203.54 wind 9.0 14400 > th dose dependent rect. 5 5
577 203.56 wind 5.0 4320 > th dose independent rect. 4 1
583 203.59 wind 5.0 4320 > th dose independent rect. 3 3
600 203.61 radiation 10.0 720 < th dose independent rect. 15 14
602 203.61 wind 5.0 90 > th dose dependent rect. 17 9
618 203.65 wind 9.0 43200 < th dose independent rect. 4 1
619 203.65 temperature 25.0 4320 > th dose independent rect. 4 1
620 203.65 precipitation 0.1 10 > th dose independent rect. 17 3
645 203.65 precipitation 0.1 10 > th dose dependent rect. 17 3
673 203.67 temperature 30.0 14400 < th dose independent rect. 17 13
675 203.67 temperature 30.0 14400 < th dose independent rect. 17 15
691 203.69 wind 1.0 43200 < th dose dependent rect. 24 5
696 203.71 wind 1.0 43200 > th dose independent rect. 3 1
700 203.72 wind 7.0 43200 > th dose independent rect. 4 2
701 203.72 wind 5.0 720 < th dose independent rect. 5 3
703 203.72 temperature 10.0 720 > th dose dependent rect. 5 12
709 203.74 radiation 20.0 720 < th dose dependent rect. 17 10
711 203.75 radiation 1.0 10 < th dose dependent rect. 5 1
715 203.76 wind 7.0 43200 > th dose dependent rect. 4 2
716 203.76 wind 9.0 14400 > th dose dependent rect. 1 9
719 203.77 humidity 80.0 4320 < th dose dependent rect. 23 5
722 203.77 wind 9.0 4320 > th dose dependent rect. 23 12
731 203.79 atmosphere 1015.0 30 < th dose independent rect. 3 23
748 203.81 temperature 30.0 14400 > th dose dependent rect. 17 1
766 203.85 atmosphere 1000.0 720 > th dose dependent rect. 19 1
772 203.86 humidity 80.0 4320 < th dose dependent rect. 1 3
776 203.87 atmosphere 1005.0 90 > th dose independent rect. 4 1
788 203.89 radiation 1.0 30 < th dose independent rect. 4 23
790 203.89 temperature 10.0 720 > th dose dependent rect. 12 5
801 203.91 wind 9.0 14400 > th dose independent rect. 1 9
807 203.92 humidity 50.0 720 > th dose independent rect. 17 17
811 203.93 wind 9.0 14400 < th dose independent rect. 24 10
818 203.94 wind 9.0 43200 < th dose independent rect. 2 3
819 203.94 radiation 10.0 720 < th dose independent rect. 17 10
821 203.95 wind 9.0 4320 > th dose independent rect. 3 1
855 203.95 wind 9.0 4320 > th dose dependent rect. 3 1
893 203.96 wind 9.0 14400 > th dose independent rect. 22 12
898 203.97 temperature 25.0 90 > th dose independent rect. 2 4
903 203.97 atmosphere 995.0 720 > th dose dependent rect. 17 10
915 203.98 atmosphere 995.0 720 > th dose dependent rect. 17 12
919 203.99 atmosphere 1000.0 30 > th dose independent rect. 5 23
971 204.05 wind 9.0 43200 > th dose independent rect. 24 5
983 204.06 atmosphere 1015.0 720 < th dose independent rect. 5 18