Os04g0203500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine proteinase.
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Os04g0203500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine proteinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.33 | 0.739 | 6.15 | 1.67 | 0.319 | 1.59 | -0.4 | 0.952 | 0.923 | 21 | 22.11 | 2216 | -- | -- |
| 249.24 | 0.735 | 6.11 | 1.92 | 0.318 | 1.52 | -0.529 | -- | 1.02 | 20.9 | 22.47 | 2219 | -- | -- |
| 247.85 | 0.733 | 6.15 | 1.66 | 0.318 | 1.6 | -- | 1.03 | 0.921 | 21.2 | 22.12 | 2215 | -- | -- |
| 250.04 | 0.736 | 6.11 | 1.94 | 0.319 | 1.52 | -- | -- | 1.02 | 21.4 | 22.5 | 2220 | -- | -- |
| 253.61 | 0.742 | 6.14 | 1.63 | -- | 1.54 | -- | 1.04 | 0.893 | -- | 22.17 | 2096 | -- | -- |
| 335.39 | 0.859 | 6.23 | 1.32 | 0.213 | -- | -0.709 | -- | 0.457 | 19.7 | -- | -- | -- | -- |
| 336.8 | 0.859 | 6.23 | 1.34 | 0.212 | -- | -- | -- | 0.455 | 20 | -- | -- | -- | -- |
| 254.45 | 0.743 | 6.11 | 1.89 | -- | 1.53 | -- | -- | 0.957 | -- | 22.2 | 1430 | -- | -- |
| 326 | 0.841 | 6.21 | -- | 0.393 | 1.05 | -- | -- | 0.659 | 22.2 | 22.6 | 793 | -- | -- |
| 339.25 | 0.861 | 6.23 | 1.33 | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
| 383.77 | 0.916 | 6.26 | -- | 0.205 | -- | -- | -- | 0.306 | 20.5 | -- | -- | -- | -- |
| 334.36 | 0.852 | 6.18 | -- | -- | 1.02 | -- | -- | 0.641 | -- | 22.5 | 876 | -- | -- |
| 386.11 | 0.917 | 6.26 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 2 | 242.72 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 4 | 243.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 14 | 244.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 16 | 244.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 18 | 245.10 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 19 | 245.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 26 | 245.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 29 | 246.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 31 | 246.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 35 | 246.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 38 | 246.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 86 | 247.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 203 | 250.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 285 | 251.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 346 | 252.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 352 | 252.58 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 357 | 252.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 358 | 252.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 361 | 252.75 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 402 | 253.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 423 | 253.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 457 | 253.99 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 459 | 254.01 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 483 | 254.25 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 496 | 254.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 502 | 254.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 523 | 254.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 529 | 254.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 534 | 254.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 541 | 254.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 545 | 254.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 563 | 255.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 576 | 255.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 599 | 255.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 631 | 255.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 675 | 255.81 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 763 | 256.42 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 769 | 256.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 891 | 257.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 896 | 257.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 901 | 257.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 964 | 257.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 967 | 257.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |