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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0202800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.22 (0.0462) R2 : 0.872
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.85 (0.109) R2dC : 0.0162 R2C : -0.291
β3 : 4.23 (0.161) R2dE : 0.223 R2E : -0.476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.7 (0.104) R2dN8 : 1.32 R2N8 : 0.641
σ : 0.849
deviance : 331.94
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_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 12.17
memory length : 20887
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.88
open length of G : 6.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.81 0.84 8.34 -0.62 0.52 3.37 -1.47 -6.66 -5.48 23.8 20.02 4318 8.17 2.97
330.34 0.847 8.19 -0.121 0.776 4 -1.69 -- -5.75 22.2 14.38 24702 4.13 3.96
328.93 0.845 8.34 -0.568 0.515 3.37 -- -6.74 -5.47 23.6 20.04 4312 8.33 2.81
324.45 0.839 8.31 -0.715 0.687 4.58 -- -- -5.94 22.4 12.89 23771 1.75 6.09
344.82 0.865 8.32 -0.548 -- 3.44 -- -6.6 -5.45 -- 20.21 4284 8.43 2.88
585.73 1.13 7.9 2.83 0.611 -- -1.27 -- -4.35 23.9 -- -- -- --
592.67 1.14 7.89 2.88 0.617 -- -- -- -4.34 23.8 -- -- -- --
342.61 0.862 8.28 -0.801 -- 4.34 -- -- -5.84 -- 9.197 23108 1.88 6.33
331.94 0.849 8.22 -- 0.85 4.23 -- -- -5.7 22.4 12.17 20887 1.88 6.3
616.61 1.16 7.88 2.9 -- -- -- -- -4.33 -- -- -- -- --
811.88 1.33 7.97 -- 0.653 -- -- -- -4.66 0.0528 -- -- -- --
349.63 0.871 8.18 -- -- 3.91 -- -- -5.67 -- 11.73 21675 1.77 5.52
838.77 1.35 7.95 -- -- -- -- -- -4.65 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.83 radiation 1.0 14400 > th dose independent rect. 18 22
3 307.65 precipitation 0.1 43200 > th dose independent rect. 2 4
4 307.77 precipitation 0.1 43200 < th dose independent rect. 2 4
5 307.77 precipitation 0.1 43200 < th dose dependent rect. 2 4
6 308.02 precipitation 0.1 43200 > th dose dependent rect. 2 4
11 308.36 radiation 1.0 43200 > th dose independent rect. 18 12
13 308.66 temperature 25.0 43200 < th dose independent rect. 13 1
15 308.97 temperature 25.0 43200 > th dose independent rect. 13 1
16 309.14 precipitation 0.1 43200 > th dose dependent rect. 1 6
23 309.72 temperature 20.0 43200 > th dose independent rect. 18 1
25 309.88 temperature 25.0 43200 < th dose dependent rect. 9 1
26 309.97 temperature 20.0 43200 > th dose independent rect. 8 1
30 310.16 radiation 1.0 14400 > th dose independent rect. 18 14
32 310.31 radiation 1.0 14400 < th dose independent rect. 19 20
34 310.33 radiation 1.0 14400 > th dose independent rect. 4 11
45 310.35 radiation 1.0 14400 < th dose independent rect. 4 11
46 310.35 radiation 1.0 14400 < th dose independent rect. 1 14
54 310.52 precipitation 0.1 43200 > th dose independent rect. 1 6
55 310.59 temperature 20.0 43200 < th dose independent rect. 18 2
56 310.62 precipitation 0.1 43200 < th dose independent rect. 1 6
57 310.62 precipitation 0.1 43200 < th dose dependent rect. 1 6
58 310.65 temperature 20.0 43200 > th dose independent rect. 5 18
74 310.71 precipitation 0.1 43200 > th dose dependent rect. 3 7
77 310.72 temperature 20.0 43200 < th dose independent rect. 5 18
99 310.87 temperature 20.0 43200 > th dose independent rect. 8 17
116 311.03 temperature 20.0 43200 < th dose independent rect. 8 17
118 311.05 temperature 20.0 43200 < th dose independent rect. 16 7
119 311.05 temperature 20.0 43200 > th dose independent rect. 15 9
126 311.10 temperature 20.0 43200 < th dose independent rect. 5 5
127 311.11 temperature 20.0 43200 > th dose independent rect. 16 7
129 311.11 temperature 25.0 43200 < th dose dependent rect. 9 5
131 311.12 temperature 20.0 43200 > th dose independent sin 18 NA
132 311.12 temperature 25.0 43200 < th dose dependent rect. 13 1
137 311.15 temperature 20.0 43200 > th dose independent rect. 12 13
146 311.18 temperature 25.0 43200 < th dose dependent rect. 7 8
147 311.19 temperature 20.0 43200 < th dose independent rect. 17 5
149 311.19 radiation 1.0 14400 > th dose independent rect. 18 16
153 311.20 temperature 20.0 43200 > th dose independent rect. 6 4
160 311.23 temperature 20.0 43200 < th dose independent sin 18 NA
162 311.23 temperature 20.0 43200 < th dose independent rect. 12 13
202 311.37 temperature 20.0 43200 > th dose independent rect. 17 5
313 311.78 precipitation 0.1 43200 < th dose independent rect. 3 7
316 311.78 precipitation 0.1 43200 < th dose dependent rect. 3 7
353 311.89 radiation 1.0 43200 > th dose independent rect. 17 2
386 311.97 temperature 20.0 43200 < th dose independent rect. 7 2
440 312.09 precipitation 0.1 43200 > th dose independent rect. 3 7
448 312.11 temperature 20.0 43200 < th dose independent sin 2 NA
449 312.12 temperature 20.0 43200 > th dose independent sin 2 NA
468 312.14 radiation 1.0 14400 > th dose independent sin 3 NA
493 312.16 temperature 25.0 43200 < th dose dependent sin 0 NA
495 312.17 temperature 20.0 43200 > th dose independent rect. 4 12
533 312.25 temperature 20.0 43200 > th dose independent no NA NA
534 312.25 temperature 20.0 43200 < th dose independent no NA NA
546 312.29 temperature 20.0 43200 < th dose independent rect. 11 23
552 312.31 temperature 20.0 43200 > th dose independent rect. 11 23
565 312.34 temperature 20.0 43200 < th dose independent rect. 15 23
574 312.37 temperature 20.0 43200 > th dose independent rect. 15 23
578 312.38 radiation 1.0 14400 < th dose independent sin 4 NA
594 312.42 humidity 80.0 43200 < th dose independent rect. 10 2
633 312.51 temperature 20.0 43200 < th dose independent rect. 19 23
653 312.56 temperature 20.0 43200 > th dose independent rect. 19 23
780 312.83 temperature 15.0 43200 > th dose dependent rect. 11 1
789 312.87 temperature 15.0 43200 > th dose dependent rect. 5 9
837 312.97 temperature 15.0 43200 > th dose dependent rect. 5 5
927 313.18 temperature 15.0 43200 > th dose dependent rect. 6 2
932 313.19 temperature 15.0 43200 > th dose dependent rect. 13 1
984 313.28 temperature 15.0 43200 > th dose dependent sin 2 NA
994 313.29 temperature 15.0 43200 > th dose dependent rect. 9 5